run_test_gnps:
	nextflow run workflow.nf -resume -c nextflow.config --parallelism=2 --ms2_tolerance=0.5 --pm_tolerance=2.0 --min_cosine=0.65 --max_shift=1999

run_test_blink:
	nextflow run workflow.nf -resume --similarity="blink" -c nextflow.config

run_test_simile:
	nextflow run workflow.nf -resume --similarity="simile" -c nextflow.config

run_test_entropy:
	nextflow run workflow.nf -resume --similarity="entropy" -c nextflow.config

run_test_index_single:
	nextflow run workflow.nf -resume --similarity="index_single_charge" -c nextflow.config --parallelism=1

run_test_index_entropy:
	nextflow run workflow.nf -resume --similarity="index_spectra_entropy" -c nextflow.config

### 