Starting tsv processing. Processing 435 files Processing: metadata_folder/122_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 129 rows! Processing: metadata_folder/391_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: 1456794|Aspergillus fumigatus: 1456794|Aspergillus fumigatus GA-L7 SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 6 rows! Processing: metadata_folder/137_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 24 rows! Processing: metadata_folder/384_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 6 rows! Processing: metadata_folder/86_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 185 rows! Processing: metadata_folder/339_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! filename: blank.mzXML.1: not allowed blank.mzXML.2: not allowed blank.mzXML.3: not allowed blank.mzXML.4: not allowed blank.mzXML.5: not allowed QC.mzXML.1: not allowed QC.mzXML.2: not allowed QC.mzXML.3: not allowed QC.mzXML.4: not allowed QC.mzXML.5: not allowed SampleTypeSub1: not applicable: missing value TermsofPosition: LA: missing value RA: missing value LVT: missing value LVB: missing value RVT: missing value RVB: missing value blank: missing value QC: missing value 6-mix: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: 29.710762| -95.396220: missing value Number of rows removed due to not enough metadata: 0 Returning 2239 rows! Processing: metadata_folder/MSV000089583.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 99 rows! Processing: metadata_folder/306_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 3 Returning 36 rows! Processing: metadata_folder/108_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value sleep deprivation: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 98 rows! Processing: metadata_folder/255_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 1 Returning 11 rows! Processing: metadata_folder/11_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 14 rows! Processing: metadata_folder/240_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_sampletype Number of rows removed due to not enough metadata: 0 Returning 22 rows! Processing: metadata_folder/418_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_City IGNORED: ATTRIBUTE_Process IGNORED: ATTRIBUTE_Part Number of rows removed due to not enough metadata: 0 Returning 17 rows! Processing: metadata_folder/332_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_refchem IGNORED: ATTRIBUTE_sample_type IGNORED: ATTRIBUTE_incubationtime IGNORED: ATTRIBUTE_NCBITaxonomy Number of rows removed due to not enough metadata: 0 Returning 36 rows! Processing: metadata_folder/30_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 478 rows! Processing: metadata_folder/7_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value BiologicalSex: not applicable: missing value not collected: missing value UBERONBodyPartName: not specified: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value ComorbidityListDOIDIndex: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 814 rows! Processing: metadata_folder/261_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value Chronic Illness: missing value Healthy: missing value DOIDCommonName: not applicable: missing value mental depression: missing value no disease reported: missing value ComorbidityListDOIDIndex: not applicable: missing value no disease reported: missing value DOID:1596: missing value DOID:526: missing value Number of rows removed due to not enough metadata: 0 Returning 200 rows! Processing: metadata_folder/181_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 64 rows! Processing: metadata_folder/98_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value right: missing value middle: missing value left: missing value HealthStatus: not applicable: missing value DOIDCommonName: no disease reported: missing value not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 1250 rows! Processing: metadata_folder/327_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 1760|Actinobacteria: 1760|Actinomycetes SampleCollectionMethod: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 19 rows! Processing: metadata_folder/25_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 96 Returning 48 rows! Processing: metadata_folder/274_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 15 rows! Processing: metadata_folder/194_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value MassSpectrometer: Agilent GC 7820A-MS 5977B|not available: missing value BiologicalSex: not specified: missing value not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not specified: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: 32.04 N 34.82 E: missing value nan: missing value Number of rows removed due to not enough metadata: 0 Returning 159 rows! Processing: metadata_folder/129_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 36 Returning 36 rows! Processing: metadata_folder/MSV000094545.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: nan: missing value SampleExtractionMethod: nan: missing value InternalStandardsUsed: nan: missing value IonizationSourceAndPolarity: nan: missing value ChromatographyAndPhase: nan: missing value BiologicalSex: nan: missing value UBERONBodyPartName: : missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value Country: nan: missing value HumanPopulationDensity: nan: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 78 rows! Processing: metadata_folder/413_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_City_and_processing IGNORED: ATTRIBUTE_Part Number of rows removed due to not enough metadata: 0 Returning 17 rows! Processing: metadata_folder/116_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: nan: missing value ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 7 Returning 57 rows! Processing: metadata_folder/318_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value not specified: missing value DOIDCommonName: not applicable: missing value not specified: missing value ComorbidityListDOIDIndex: not applicable: missing value not specified: missing value HumanPopulationDensity: not specified: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 1107 rows! Processing: metadata_folder/103_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value right: missing value middle: missing value left: missing value HealthStatus: not applicable: missing value DOIDCommonName: no disease reported: missing value not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 1250 rows! Processing: metadata_folder/406_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: 135461|Bacillus subtilis: 135461|Bacillus subtilis subsp. subtilis : missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/58_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleExtractionMethod: not specified: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not specified: missing value HealthStatus: not collected: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not collected: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 223 rows! Processing: metadata_folder/154_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 119947|Alternaria: 119947|Alternaria sect. Ulocladium BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: na: missing value Number of rows removed due to not enough metadata: 0 Returning 503 rows! Processing: metadata_folder/209_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value LatitudeandLongitude: -33.9986|+25.70955: missing value -33.97321667|+25.683288333: missing value -33.97321667|+25.683288334: missing value -33.97321667|+25.683288335: missing value -33.97321667|+25.683288336: missing value -33.97321667|+25.683288337: missing value -33.97321667|+25.683288338: missing value -33.9978|+25.70817: missing value -33.9742|+25.68111667: missing value -33.97321667|+25.68328333: missing value -33.98278333|+25.6941: missing value -33.99778333|+25.70816667: missing value -33.84548|+25.81663: missing value IGNORED: ATTRIBUTE_YearCollected IGNORED: ATTRIBUTE_Bioactivity IGNORED: LocalArea IGNORED: Common Name IGNORED: ATTRIBUTE_Genus IGNORED: ATTRIBUTE_CollectionSite IGNORED: ATTRIBUTE_CollectionID IGNORED: DNASample Number of rows removed due to not enough metadata: 0 Returning 275 rows! Processing: metadata_folder/141_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 19 Returning 19 rows! Processing: metadata_folder/223_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value not collected: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value not specified: missing value HealthStatus: not applicable: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not applicable: missing value IGNORED: MS_column Number of rows removed due to not enough metadata: 0 Returning 168 rows! Processing: metadata_folder/72_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value gall bladder: gallbladder TermsofPosition: not specified: missing value HealthStatus: not specified: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not specified: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 963 rows! Processing: metadata_folder/370_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 284492|Vachellia collinsii : 284492|Vachellia collinsii SampleCollectionMethod: not specified: missing value MassSpectrometer: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value IGNORED: ATTRIBUTE_InyectionNumber IGNORED: ATTRIBUTE_SampleType Number of rows removed due to not enough metadata: 0 Returning 32 rows! Processing: metadata_folder/236_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 135635|Streptopelia senegalensis: 135635|Spilopelia senegalensis 121526|Criniferoides leucogaster: 121526|Corythaixoides leucogaster 54498|Gallirallus owstoni: missing value 9111|Anthropoides virgo: 9111|Grus virgo 75838|Anas clypeata: 75838|Spatula clypeata not specified: missing value 1088058|Przewalskium albirostris: 1088058|Cervus albirostris 101278|Nycticebus pygmaeus: 101278|Xanthonycticebus pygmaeus 9493|Callithrix pygmaea: 9493|Cebuella pygmaea 9829|Pecari tajacu: 9829|Dicotyles tajacu 704175|Phoenicoparrus minor: 704175|Phoeniconaias minor 75840|Anas cyanoptera: 75840|Spatula cyanoptera 8865|Cyanochen cyanopterus: 8865|Cyanochen cyanoptera 424585|Ailurus fulgens styani: 424585|Ailurus styani 210647|Panthera leo persica: 210647|Helogale parvula 89252|Equus burchellii quagga: 89252|Equus quagga burchellii 387824|Circus cyaneus hudsonius: missing value 378071|Stegostoma fasciatum: missing value 79690|Dasyatis sabina: 79690|Hypanus sabinus 586789|Centropyge loricula: 586789|Centropyge loriculus 229058|Ostracion cubicus: 229058|Ostracion cubicum 126867|Gulosus aristotelis: 126867|Phalacrocorax aristotelis 52221|elgaria: 52221|Elgaria 8355|Acrantophis madagascariensis: 8355|Xenopus laevis 52670|austrofundulus limnaeus: 52670|Austrofundulus limnaeus 717477|Heloderma horridum exasperatum: 717477|Heloderma exasperatum 8404|Rana pipiens: 8404|Lithobates pipiens 322500|Phrynobatrachus accraensis: missing value 932683|Harpactes mackloti: 932683|Apalharpactes mackloti 1843784|Apagesoma australis: 1843784|Apagesoma australe 512567|Xenochrophis piscator: missing value 8400|Rana catesbeiana: 8400|Aquarana catesbeiana 261672|Ptychadena schubotzi: 261672|Ptychadena tellinii 201311|Garrulax ocellatus: 201311|Ianthocincla ocellata 46218|Coturnix chinensis: 46218|Excalfactoria chinensis 302529|Calyptorhynchus funereus: 302529|Zanda funerea 240734|Pogonornis dubius: 240734|Lybius dubius 471713|Cacatua leadbeateri: 471713|Lophochroa leadbeateri 58209|Tangara episcopus: 58209|Thraupis episcopus 1948888|Kittacincla malabarica: 1948888|Copsychus malabaricus 56069|Nannopterum auritus: 56069|Phalacrocorax auritus 1171711|Anthropoides paradiseus: 1171711|Grus paradisea 9115|Grus vipio: missing value 54570|Aramides cajanea: missing value 79631|Hydrobates furcatus: 79631|Oceanodroma furcata 202946|Apteryx australis mantelli: 202946|Apteryx mantelli mantelli : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: gall bladder: gallbladder not specified: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value IGNORED: ATTRIBUTE_Plate IGNORED: ATTRIBUTE_Kingdom IGNORED: ATTRIBUTE_Order IGNORED: ATTRIBUTE_Class IGNORED: ATTRIBUTE_Phylum IGNORED: ATTRIBUTE_Genus IGNORED: ATTRIBUTE_Family Number of rows removed due to not enough metadata: 0 Returning 1877 rows! Processing: metadata_folder/67_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value ComorbidityListDOIDIndex: not applicable: missing value no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 2293 rows! Processing: metadata_folder/365_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 99 rows! Processing: metadata_folder/217_gnps_metadata.tsv MassiveID: MISSING. STOPPING INTERPRETATION! Processing: metadata_folder/46_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 87 rows! Processing: metadata_folder/344_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified: missing value 230597|Schefflera delavayi: 230597|Heptapleurum delavayi 50346|Saccharum arundinaceum: 50346|Tripidium arundinaceum 312427|Caloncoba welwitschii: 2708920|Caloncoba welwitschii 1321794|Chrysophyllum subnudum: missing value 260718|Phyllanthus acidus: 260718|Cicca acida 155018|Anogeissus acuminata: missing value 459110|Ailanthus triphysa: 459110|Ailanthus triphysus 319571|Phyllanthus casticum: 319571|Kirganelia castica 46415|Schefflera arboricola: 46415|Heptapleurum arboricola 1225699|Solori scandens: 1225699|Brachypterum scandens 1784723|Desmodium heterophyllum: 1784723|Grona heterophylla 296036|Phyllanthus emblica: 296036|Emblica officinalis 152432|Shorea roxburghii: 152432|Anthoshorea roxburghii : missing value BiologicalSex: not specified: missing value UBERONBodyPartName: not specified: missing value : missing value TermsofPosition: not specified: missing value HealthStatus: not specified: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not specified: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 3840 rows! Processing: metadata_folder/202_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/53_gnps_metadata.tsv SampleType: ADDED! SampleTypeSub1: ADDED! NCBITaxonomy: ADDED! YearOfAnalysis: ADDED! SampleCollectionMethod: ADDED! SampleExtractionMethod: ADDED! InternalStandardsUsed: ADDED! MassSpectrometer: ADDED! IonizationSourceAndPolarity: ADDED! ChromatographyAndPhase: ADDED! SubjectIdentifierAsRecorded: ADDED! AgeInYears: ADDED! BiologicalSex: ADDED! UBERONBodyPartName: ADDED! TermsofPosition: ADDED! HealthStatus: ADDED! DOIDCommonName: ADDED! ComorbidityListDOIDIndex: ADDED! SampleCollectionDateandTime: ADDED! Country: ADDED! HumanPopulationDensity: ADDED! LatitudeandLongitude: ADDED! DepthorAltitudeMeters: ADDED! qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! IGNORED: Analysis_SampleExtractionMethod IGNORED: ATTRIBUTE_Subject_Urine_GFR IGNORED: Analysis_IonizationSourceAndPolarity IGNORED: ATTRIBUTE_Curated_SampleType IGNORED: ATTRIBUTE_Subject_Sex IGNORED: Curated_Comorbidity_ListDOIDs IGNORED: ATTRIBUTE_Subject_LifeStage IGNORED: ATTRIBUTE_Subject_HumanPopulationDensity IGNORED: Subject_AgeInYears IGNORED: Study_SampleTermsofPosition IGNORED: ATTRIBUTE_Subject_Smoking IGNORED: Study_DayAsReported IGNORED: Analysis_SampleCollectionMethod IGNORED: Analysis_YearOfAnalysis IGNORED: ATTRIBUTE_Subject_antihypertensive_drug_classes_number IGNORED: Study_TimepointMin IGNORED: Filename_Filepath IGNORED: Study_DayRelative IGNORED: ATTRIBUTE_Curated_BodyPartOntologyName IGNORED: ATTRIBUTE_Curated_DiseaseOntologyIndex IGNORED: Curated_DiseaseCommonName IGNORED: Study_SampleTypeasRecorded IGNORED: ATTRIBUTE_Subject_Urine_Creatinine_micromol_per_Liter IGNORED: Analysis_ChromatographyAndPhase IGNORED: ATTRIBUTE_Curated_BodyPartOntologyIndex IGNORED: Study_UniqueSubjectID IGNORED: ATTRIBUTE_Analysis_MassSpectrometer IGNORED: Study_SubjectIdentifierAsRecorded IGNORED: Analysis_InternalStandardsUsed IGNORED: ATTRIBUTE_Subject_Diabetes IGNORED: Subject_Country IGNORED: Subject_Health IGNORED: ATTRIBUTE_Curated_SampleType_Sub1 Number of rows removed due to not enough metadata: 44 Returning 0 rows! Processing: metadata_folder/351_gnps_metadata.tsv MassiveID: MISSING. STOPPING INTERPRETATION! Processing: metadata_folder/160_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value IGNORED: ATTRIBUTE_SampleType IGNORED: ATTRIBUTE_z IGNORED: ATTRIBUTE_Samplelocation IGNORED: ATTRIBUTE_x IGNORED: ATTRIBUTE_y IGNORED: ATTRIBUTE_sampling_spot_radius Number of rows removed due to not enough metadata: 0 Returning 227 rows! Processing: metadata_folder/280_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 114 rows! Processing: metadata_folder/228_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not specified|Staphylococcus aureus JE3: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_SampleType Number of rows removed due to not enough metadata: 0 Returning 139 rows! Processing: metadata_folder/175_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! TermsofPosition: not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value Number of rows removed due to not enough metadata: 0 Returning 26 rows! Processing: metadata_folder/295_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 380 Returning 164 rows! Processing: metadata_folder/166_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 52 rows! Processing: metadata_folder/286_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 17 rows! Processing: metadata_folder/368_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! UBERONBodyPartName: not specified: missing value TermsofPosition: not specified: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 20 rows! Processing: metadata_folder/173_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! TermsofPosition: not applicable: missing value DOIDCommonName: ischemic stroke: missing value ComorbidityListDOIDIndex: nan: missing value DOID:10763;DOID6713: missing value Number of rows removed due to not enough metadata: 0 Returning 22 rows! Processing: metadata_folder/293_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 1 Returning 1 rows! Processing: metadata_folder/MSV000082493.tsv SampleTypeSub1: ADDED! YearOfAnalysis: ADDED! SampleCollectionMethod: ADDED! SampleExtractionMethod: ADDED! InternalStandardsUsed: ADDED! IonizationSourceAndPolarity: ADDED! ChromatographyAndPhase: ADDED! SubjectIdentifierAsRecorded: ADDED! TermsofPosition: ADDED! ComorbidityListDOIDIndex: ADDED! SampleCollectionDateandTime: ADDED! Country: ADDED! HumanPopulationDensity: ADDED! LatitudeandLongitude: ADDED! DepthorAltitudeMeters: ADDED! qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: QC: missing value blank: missing value biofluid: missing value tissue: missing value NCBITaxonomy: not applicable: missing value : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value IGNORED: Ethnicity IGNORED: Social_Economical_Status Number of rows removed due to not enough metadata: 119 Returning 690 rows! Processing: metadata_folder/40_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 36 rows! Processing: metadata_folder/342_gnps_metadata.tsv MassiveID: MISSING. STOPPING INTERPRETATION! Processing: metadata_folder/211_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 185 rows! Processing: metadata_folder/55_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 137 rows! Processing: metadata_folder/357_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 27 rows! Processing: metadata_folder/159_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value not collected: missing value LatitudeandLongitude: 32.842;-117.258: missing value Number of rows removed due to not enough metadata: 0 Returning 384 rows! Processing: metadata_folder/204_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/74_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: 41.8719 N, 12.5674 E: missing value Number of rows removed due to not enough metadata: 0 Returning 68 rows! Processing: metadata_folder/376_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 8 rows! Processing: metadata_folder/225_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 4577|Zea mays L.: 4577|Zea mays : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: food_fermented Number of rows removed due to not enough metadata: 0 Returning 9 rows! Processing: metadata_folder/298_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: Xevo G2 XS Tof|MS:1002729: Xevo G2-XS Tof|MS:1002729 IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 1 Returning 99 rows! Processing: metadata_folder/178_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not collected: missing value : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 77 rows! Processing: metadata_folder/363_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: Bacteria: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: ML import: not available: missing value Number of rows removed due to not enough metadata: 0 Returning 100 rows! Processing: metadata_folder/230_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not specified|Staphylococcus aureus JE3: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_SampleType Number of rows removed due to not enough metadata: 0 Returning 280 rows! Processing: metadata_folder/152_gnps_metadata.tsv SampleType: ADDED! SampleTypeSub1: ADDED! NCBITaxonomy: ADDED! YearOfAnalysis: ADDED! SampleCollectionMethod: ADDED! SampleExtractionMethod: ADDED! InternalStandardsUsed: ADDED! MassSpectrometer: ADDED! IonizationSourceAndPolarity: ADDED! ChromatographyAndPhase: ADDED! SubjectIdentifierAsRecorded: ADDED! AgeInYears: ADDED! BiologicalSex: ADDED! UBERONBodyPartName: ADDED! TermsofPosition: ADDED! HealthStatus: ADDED! DOIDCommonName: ADDED! ComorbidityListDOIDIndex: ADDED! SampleCollectionDateandTime: ADDED! Country: ADDED! HumanPopulationDensity: ADDED! LatitudeandLongitude: ADDED! DepthorAltitudeMeters: ADDED! qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! IGNORED: Analysis_SampleExtractionMethod IGNORED: ATTRIBUTE_Subject_Urine_GFR IGNORED: Analysis_IonizationSourceAndPolarity IGNORED: ATTRIBUTE_Curated_SampleType IGNORED: ATTRIBUTE_Subject_Sex IGNORED: Curated_Comorbidity_ListDOIDs IGNORED: ATTRIBUTE_Subject_LifeStage IGNORED: ATTRIBUTE_Subject_HumanPopulationDensity IGNORED: Subject_AgeInYears IGNORED: Study_SampleTermsofPosition IGNORED: ATTRIBUTE_Subject_Smoking IGNORED: Study_DayAsReported IGNORED: Analysis_SampleCollectionMethod IGNORED: Analysis_YearOfAnalysis IGNORED: ATTRIBUTE_Subject_antihypertensive_drug_classes_number IGNORED: Study_TimepointMin IGNORED: Filename_Filepath IGNORED: Study_DayRelative IGNORED: ATTRIBUTE_Curated_BodyPartOntologyName IGNORED: ATTRIBUTE_Curated_DiseaseOntologyIndex IGNORED: Curated_DiseaseCommonName IGNORED: Study_SampleTypeasRecorded IGNORED: ATTRIBUTE_Subject_Urine_Creatinine_micromol_per_Liter IGNORED: Analysis_ChromatographyAndPhase IGNORED: ATTRIBUTE_Curated_BodyPartOntologyIndex IGNORED: Study_UniqueSubjectID IGNORED: ATTRIBUTE_Analysis_MassSpectrometer IGNORED: Study_SubjectIdentifierAsRecorded IGNORED: Analysis_InternalStandardsUsed IGNORED: ATTRIBUTE_Subject_Diabetes IGNORED: Subject_Country IGNORED: Subject_Health IGNORED: ATTRIBUTE_Curated_SampleType_Sub1 Number of rows removed due to not enough metadata: 26 Returning 0 rows! Processing: metadata_folder/147_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not specified|Euphorbia pithyusa ssp. cupanii: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 14 rows! Processing: metadata_folder/MSV000082262.tsv SampleTypeSub1: ADDED! YearOfAnalysis: ADDED! SampleCollectionMethod: ADDED! SampleExtractionMethod: ADDED! InternalStandardsUsed: ADDED! IonizationSourceAndPolarity: ADDED! ChromatographyAndPhase: ADDED! SubjectIdentifierAsRecorded: ADDED! TermsofPosition: ADDED! ComorbidityListDOIDIndex: ADDED! SampleCollectionDateandTime: ADDED! Country: ADDED! HumanPopulationDensity: ADDED! LatitudeandLongitude: ADDED! DepthorAltitudeMeters: ADDED! qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: biofluid: missing value NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value not collected: missing value UBERONBodyPartName: : missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value IGNORED: SocialEconomicalStatus IGNORED: Ethnicity Number of rows removed due to not enough metadata: 0 Returning 161 rows! Processing: metadata_folder/349_gnps_metadata.tsv SampleCollectionDateandTime: ADDED! LatitudeandLongitude: ADDED! DepthorAltitudeMeters: ADDED! qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! TermsofPosition: not applicable: missing value DOIDCommonName: ischemic stroke: missing value ComorbidityListDOIDIndex: no disease reported: missing value IGNORED: ATTRIBUTE_Alchohol IGNORED: ATTRIBUTE_Smoking Number of rows removed due to not enough metadata: 0 Returning 100 rows! Processing: metadata_folder/415_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: not applicable: missing value 228215|Pleurotus eryngii ferulae: 228215|Pleurotus eryngii var. ferulae : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_Taxonomy IGNORED: SampleType1 IGNORED: ATTRIBUTE_ Percent of OMSW Number of rows removed due to not enough metadata: 0 Returning 61 rows! Processing: metadata_folder/110_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value circadian rhythm disorders: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 257 rows! Processing: metadata_folder/105_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value sleep deprivation: missing value ComorbidityListDOIDIndex: not applicable: missing value no disease reported: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 434 rows! Processing: metadata_folder/400_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: 96241|Bacillus subtilis: 96241|Bacillus spizizenii : missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/258_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 4 Returning 114 rows! Processing: metadata_folder/267_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 16 rows! Processing: metadata_folder/187_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not specified: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value IGNORED: ATTRIBUTE_SampleType IGNORED: ATTRIBUTE_SampleDay Number of rows removed due to not enough metadata: 0 Returning 167 rows! Processing: metadata_folder/1_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: no disease reported: missing value not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 610 rows! Processing: metadata_folder/389_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 8 rows! Processing: metadata_folder/36_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not specified: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: no disease reported: missing value not specified: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: 32.842AND-117.258: missing value Number of rows removed due to not enough metadata: 0 Returning 731 rows! Processing: metadata_folder/272_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 465 Returning 93 rows! Processing: metadata_folder/192_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 49 rows! Processing: metadata_folder/321_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value : missing value 435590|Bacteroides vulgatus: 435590|Phocaeicola vulgatus ATCC 8482 349741|Akkermansia muciniphila: 349741|Akkermansia muciniphila ATCC BAA-835 391904|Bifidobacterium longum subsp. infantis: 391904|Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_incubationtime IGNORED: ATTRIBUTE_coffee IGNORED: ATTRIBUTE_NCBITaxonomy IGNORED: ATTRIBUTE_sample_type IGNORED: ATTRIBUTE_chemmix Number of rows removed due to not enough metadata: 0 Returning 112 rows! Processing: metadata_folder/23_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 22 rows! Processing: metadata_folder/253_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 11 rows! Processing: metadata_folder/MSV000085142.tsv SampleTypeSub1: ADDED! YearOfAnalysis: ADDED! SampleCollectionMethod: ADDED! SampleExtractionMethod: ADDED! InternalStandardsUsed: ADDED! IonizationSourceAndPolarity: ADDED! ChromatographyAndPhase: ADDED! SubjectIdentifierAsRecorded: ADDED! TermsofPosition: ADDED! ComorbidityListDOIDIndex: ADDED! SampleCollectionDateandTime: ADDED! Country: ADDED! HumanPopulationDensity: ADDED! LatitudeandLongitude: ADDED! DepthorAltitudeMeters: ADDED! qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: tissue: missing value QC: missing value blank: missing value NCBITaxonomy: QC: missing value : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value IGNORED: SocialEconomicalStatus IGNORED: ATTRIBUTE_treatment IGNORED: Ethnicity Number of rows removed due to not enough metadata: 24 Returning 102 rows! Processing: metadata_folder/300_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 15 Returning 4 rows! Processing: metadata_folder/246_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not collected: missing value IGNORED: Attribute_E.carotovora IGNORED: Unnamed: 29 IGNORED: Attribute_A.baylyi IGNORED: Attribute_E.coli IGNORED: Attribute_S.epidermidis IGNORED: Attribute_ESKAPE IGNORED: Attribute_media IGNORED: Attribute_E.aerogenes IGNORED: Attribute_B.subtilis IGNORED: Attribute_P.putida Number of rows removed due to not enough metadata: 0 Returning 62 rows! Processing: metadata_folder/315_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not specified: missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_S1 IGNORED: ATTRIBUTE_time IGNORED: ATTRIBUTE_strain IGNORED: ATTRIBUTE_coffee IGNORED: ATTRIBUTE_S2 IGNORED: ATTRIBUTE_media Number of rows removed due to not enough metadata: 0 Returning 431 rows! Processing: metadata_folder/17_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 144 Returning 72 rows! Processing: metadata_folder/397_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified: missing value 1314793|Penicillium glabrum: 1314793|Penicillium glabrum DAOM 239074 1263492|Curvularia lunata: 1263492|Curvularia lunata CX-3 : missing value 1314791|Penicillium expansum: 1314791|Penicillium expansum ATCC 24692 BiologicalSex: not specified: missing value UBERONBodyPartName: not specified: missing value : missing value TermsofPosition: not specified: missing value HealthStatus: not specified: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not specified: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 96 rows! Processing: metadata_folder/95_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value sleep deprivation: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 493 rows! Processing: metadata_folder/MSV000082582.tsv SampleTypeSub1: ADDED! YearOfAnalysis: ADDED! SampleCollectionMethod: ADDED! SampleExtractionMethod: ADDED! InternalStandardsUsed: ADDED! IonizationSourceAndPolarity: ADDED! ChromatographyAndPhase: ADDED! SubjectIdentifierAsRecorded: ADDED! TermsofPosition: ADDED! ComorbidityListDOIDIndex: ADDED! SampleCollectionDateandTime: ADDED! Country: ADDED! HumanPopulationDensity: ADDED! LatitudeandLongitude: ADDED! DepthorAltitudeMeters: ADDED! qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: biofluid: missing value blank: missing value QC: missing value NCBITaxonomy: : missing value not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value HealthStatus: not applicable: missing value DOIDCommonName: circadian rhythm disorders: missing value not applicable: missing value IGNORED: ATTRIBUTE_social_defeat IGNORED: ATTRIBUTE_circadian_disruption IGNORED: ATTRIBUTE_experimental_day IGNORED: ATTRIBUTE_diet IGNORED: Ethnicity IGNORED: SocialEconomicalStatus IGNORED: ATTRIBUTE_timepoint Number of rows removed due to not enough metadata: 83 Returning 306 rows! Processing: metadata_folder/28_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 60 Returning 30 rows! Processing: metadata_folder/199_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not collected: missing value : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 77 rows! Processing: metadata_folder/279_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 12 Returning 12 rows! Processing: metadata_folder/421_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 40 rows! Processing: metadata_folder/124_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: electrospray ionization (NOS): missing value ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 576 rows! Processing: metadata_folder/382_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 8 rows! Processing: metadata_folder/131_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 30 rows! Processing: metadata_folder/319_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified|Omphalea bracteata: missing value not specified|Astrotrichilia valiandra: missing value not specified|Jatropha mahafalensis: missing value not specified|Malleastrum horokoke: missing value not specified|Plumbago aphylla: missing value not specified|Nuxia coriacea: missing value not specified|Euonymus indicus: missing value not specified|Tabernaemontana bovina: 3036760|Tabernaemontana bovina not specified|Antidesma acidum: missing value BiologicalSex: not specified: missing value UBERONBodyPartName: nan: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 50 rows! Processing: metadata_folder/117_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 134 rows! Processing: metadata_folder/412_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: not applicable: missing value 228215|Pleurotus eryngii ferulae: 228215|Pleurotus eryngii var. ferulae BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_Taxonomy IGNORED: SampleType1 IGNORED: ATTRIBUTE_ Percent of OMSW Number of rows removed due to not enough metadata: 0 Returning 108 rows! Processing: metadata_folder/407_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: 135461|Bacillus subtilis: 135461|Bacillus subtilis subsp. subtilis : missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/102_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value right: missing value middle: missing value left: missing value HealthStatus: not applicable: missing value DOIDCommonName: no disease reported: missing value not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 1250 rows! Processing: metadata_folder/180_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not collected: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value IGNORED: ATTRIBUTE_experiment IGNORED: ATTRIBUTE_sampletype Number of rows removed due to not enough metadata: 0 Returning 117 rows! Processing: metadata_folder/260_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 112 rows! Processing: metadata_folder/31_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 445 Returning 162 rows! Processing: metadata_folder/195_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not collected: missing value Number of rows removed due to not enough metadata: 0 Returning 479 rows! Processing: metadata_folder/275_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 82 rows! Processing: metadata_folder/MSV000094097.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value not collected: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not collected: missing value LatitudeandLongitude: nan: missing value IGNORED: ATTRIBUTE_Diet IGNORED: id Number of rows removed due to not enough metadata: 0 Returning 264 rows! Processing: metadata_folder/128_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: Unnamed: 0 IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 72 rows! Processing: metadata_folder/99_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value right: missing value middle: missing value left: missing value HealthStatus: not applicable: missing value DOIDCommonName: no disease reported: missing value not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 1250 rows! Processing: metadata_folder/24_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 12 Returning 6 rows! Processing: metadata_folder/326_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 100 rows! Processing: metadata_folder/109_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value circadian rhythm disorders: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 90 rows! Processing: metadata_folder/254_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 2 Returning 32 rows! Processing: metadata_folder/307_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! filename: 10-hydroxygeissoschizol.mgf: not allowed 10-hydroxyusambarensine.mgf: not allowed 10-hydroxyusambarine.mgf: not allowed 11-hydroxyusambarine.mgf: not allowed 11-methoxyyohimbine.mgf: not allowed 14,15-dehydrovincamine.mgf: not allowed 18,19-dihydrousambarine.mgf: not allowed 18-hydroxyisosungucine.mgf: not allowed 19,20-dehydroervatamine.mgf: not allowed 19,20-dihydrousambarensine.mgf: not allowed 19,20-epoxynovacine.mgf: not allowed 2,7-dihydroxyapogeissoschizine.mgf: not allowed 20_episerpentinine.mgf: not allowed 3_4_5_6_tetradehydrogeissoschizol.mgf: not allowed 3_4_5_6_tetradehydrogeissospermine.mgf: not allowed 3_4_5_6_tetradehydrolongicaudatine_Y.mgf: not allowed 3_oxotabernaelegantine_B.mgf: not allowed 3-epimeloscine.mgf: not allowed 3-R,S-hydroxytabernaelegantine A.mgf: not allowed 6,7-dihydroflavopereirine.mgf: not allowed Acetyl-splendoline.mgf: not allowed Ajmaline.mgf: not allowed Akagerine.mgf: not allowed Akuammicine.mgf: not allowed Akuammidine.mgf: not allowed Akuammigine.mgf: not allowed Akuammiline.mgf: not allowed Akuammine.mgf: not allowed Alloyohimbine.mgf: not allowed Alpha-colubrine.mgf: not allowed Alpha-methylyohimbine.mgf: not allowed Angustine.mgf: not allowed Antirhine.mgf: not allowed Apparicine.mgf: not allowed Aspidofractinine.mgf: not allowed Bipleiophylline.mgf: not allowed Brucine.mgf: not allowed Burnamine.mgf: not allowed Cadambine.mgf: not allowed Camptothecine.mgf: not allowed Carapanaubine.mgf: not allowed Catharanthine.mgf: not allowed Ceridimine.mgf: not allowed C-fluorocurarine.mgf: not allowed Cinchonamine HCl.mgf: not allowed C-mavacurine.mgf: not allowed Condylocarpine N-oxide.mgf: not allowed Conopharyngine.mgf: not allowed Coronaridine.mgf: not allowed Corynantheidal.mgf: not allowed Corynantheidine.mgf: not allowed Corynantheidol.mgf: not allowed Corynantheine.mgf: not allowed Corynantheol.mgf: not allowed Corynanthine.mgf: not allowed Criophylline.mgf: not allowed Cymoside.mgf: not allowed Desacetyl-isosplendine.mgf: not allowed Desoxycabufiline.mgf: not allowed Dregamine.mgf: not allowed Echitamidine.mgf: not allowed Echitamine.mgf: not allowed Ervafoline.mgf: not allowed Ervatamine.mgf: not allowed Ervitsine.mgf: not allowed Geissolaevine.mgf: not allowed Geissolosimine.mgf: not allowed Geissoschizine.mgf: not allowed Geissoschizoline.mgf: not allowed Geissospermine.mgf: not allowed Gelsemicine.mgf: not allowed Gelsemine.mgf: not allowed Goniomedine A.mgf: not allowed Goniomedine B.mgf: not allowed Goniomedine_A_N_oxide.mgf: not allowed Goniomedinone.mgf: not allowed Goniomitine.mgf: not allowed Grandilodine B.mgf: not allowed Grandilodine C.mgf: not allowed Holstiine.mgf: not allowed Holstiline.mgf: not allowed Ibogaine.mgf: not allowed Ibogamine.mgf: not allowed Iboxygaine.mgf: not allowed Icajine.mgf: not allowed Isomalindine.mgf: not allowed Isoretuline.mgf: not allowed Isostrychnine.mgf: not allowed Isostrychnopentamine A.mgf: not allowed Isosungucine.mgf: not allowed Lanciferine.mgf: not allowed Leuconolam.mgf: not allowed Leucoridine A.mgf: not allowed Lundurine A.mgf: not allowed Malindine.mgf: not allowed Melosuavine E.mgf: not allowed Methuenine.mgf: not allowed Methyle reserpate.mgf: not allowed Mitrinermine.mgf: not allowed N4-methylantirhine.mgf: not allowed Naucleidinal.mgf: not allowed Naulafine.mgf: not allowed Nb-methylusambarensine.mgf: not allowed Novacine.mgf: not allowed O_3_4_5_trimethoxycinnamate-OH-vincamajine.mgf: not allowed O-trimethoxy-3,4,5-benzoyl-OH-vincamajine_50_70_30.mgf: not allowed Ochrolifuanine A.mgf: not allowed Ochropamine.mgf: not allowed Ochropposinine.mgf: not allowed Olivacine.mgf: not allowed O-methylgeissolaevine.mgf: not allowed Panarine.mgf: not allowed Pandine.mgf: not allowed Pericyclivine.mgf: not allowed Perivine.mgf: not allowed Picraline.mgf: not allowed Pleiocarpamine.mgf: not allowed Pleiocarpine.mgf: not allowed Pleiocarpinilam.mgf: not allowed Pleiocarpinine.mgf: not allowed Pleiocarpoline.mgf: not allowed Pleiokomenine A.mgf: not allowed Pleiokomenine B.mgf: not allowed Pleiomutine.mgf: not allowed Pleiomutinine.mgf: not allowed Polyneuridine.mgf: not allowed Protostrychnine.mgf: not allowed Pseudostrychnine.mgf: not allowed Pseudoyohimbine.mgf: not allowed Quebrachamine.mgf: not allowed Quebrachidine.mgf: not allowed Quinidine.mgf: not allowed Raubasine.mgf: not allowed Rauvomitine.mgf: not allowed Reserpiline.mgf: not allowed Reserpine.mgf: not allowed Retuline.mgf: not allowed Serpentine.mgf: not allowed Splendoline.mgf: not allowed Strictosamide.mgf: not allowed Strictosidine.mgf: not allowed Strychnine.mgf: not allowed Strychnofoline.mgf: not allowed Strychnogucine A.mgf: not allowed Strychnogucine C.mgf: not allowed Strychnohexamine.mgf: not allowed Strychnopentamine.mgf: not allowed Strychnophylline.mgf: not allowed Sungucine.mgf: not allowed Tabernaemontanine.mgf: not allowed Tabernamine.mgf: not allowed Tabernanthine.mgf: not allowed Tabersonine.mgf: not allowed Trimethoxy-3,4,5-cinnamate-vincamajine.mgf: not allowed Tubotaiwine.mgf: not allowed Usambarine.mgf: not allowed Vellosimine.mgf: not allowed Villalstonine.mgf: not allowed Vinblastine.mgf: not allowed Vincamajine.mgf: not allowed Vincamine.mgf: not allowed Vincosamide.mgf: not allowed Vindolinine.mgf: not allowed Voacalgine_A.mgf: not allowed Voacamine.mgf: not allowed Voacangine.mgf: not allowed Voachalotine.mgf: not allowed Vobasine.mgf: not allowed Vobtusine.mgf: not allowed Vomicine.mgf: not allowed Wieland-Gumlich aldehyde.mgf: not allowed Yohimbine.mgf: not allowed SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 344 rows! Processing: metadata_folder/241_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not specified: missing value TermsofPosition: not applicable: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not specified: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 195 rows! Processing: metadata_folder/419_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_City IGNORED: ATTRIBUTE_Process Number of rows removed due to not enough metadata: 0 Returning 17 rows! Processing: metadata_folder/10_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not specified: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not specified: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: 32.876878;-117.234459: missing value 32.876878;-117.234460: missing value 32.876878;-117.234461: missing value 32.876878;-117.234462: missing value 32.876878;-117.234463: missing value 32.876878;-117.234464: missing value 32.876878;-117.234465: missing value 32.876878;-117.234466: missing value 32.876878;-117.234467: missing value 32.876878;-117.234468: missing value 32.876878;-117.234469: missing value 32.876878;-117.234470: missing value 32.876878;-117.234471: missing 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value 32.876878;-117.235012: missing value 32.876878;-117.235013: missing value 32.876878;-117.235014: missing value 32.876878;-117.235015: missing value 32.876878;-117.235016: missing value 32.876878;-117.235017: missing value 32.876878;-117.235018: missing value 32.876878;-117.235019: missing value 32.876878;-117.235020: missing value 32.876878;-117.235021: missing value 32.876878;-117.235022: missing value 32.876878;-117.235023: missing value 32.876878;-117.235024: missing value 32.876878;-117.235025: missing value 32.876878;-117.235026: missing value 32.876878;-117.235027: missing value 32.876878;-117.235028: missing value 32.876878;-117.235029: missing value 32.876878;-117.235030: missing value 32.876878;-117.235031: missing value 32.876878;-117.235032: missing value 32.876878;-117.235033: missing value 32.876878;-117.235034: missing value 32.876878;-117.235035: missing value 32.876878;-117.235036: missing value 32.876878;-117.235037: missing value 32.876878;-117.235038: missing value 32.876878;-117.235039: missing value Number of rows removed due to not enough metadata: 0 Returning 581 rows! Processing: metadata_folder/312_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value none specified|Euherdmania: 2795861|Euherdmania SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_collection_subregion IGNORED: ATTRIBUTE_culture_v_collection IGNORED: FieldID IGNORED: ATTRIBUTE_collection_site IGNORED: ATTRIBUTE_collection_region_GuamShrimp IGNORED: ATTRIBUTE_collection_region IGNORED: ATTRIBUTE_shrimp_v_nonshrimp Number of rows removed due to not enough metadata: 0 Returning 156 rows! Processing: metadata_folder/390_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 5 rows! Processing: metadata_folder/123_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 168 Returning 168 rows! Processing: metadata_folder/87_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 120 rows! Processing: metadata_folder/385_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 441164|Burkholderia thailandensis: 441164|Burkholderia thailandensis Bt4 : missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 71 rows! Processing: metadata_folder/338_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value MassSpectrometer: Xevo G2 XS Tof|MS:1002729: Xevo G2-XS Tof|MS:1002729 ChromatographyAndPhase: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 8 rows! Processing: metadata_folder/136_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 300 rows! Processing: metadata_folder/281_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 26 rows! Processing: metadata_folder/161_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 30 rows! Processing: metadata_folder/229_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value IGNORED: ATTRIBUTE_Gavaged Bile Acid IGNORED: ATTRIBUTE_Diet type Number of rows removed due to not enough metadata: 0 Returning 105 rows! Processing: metadata_folder/MSV000095697.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: nan: missing value : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value IGNORED: ATTRIBUTE_temp IGNORED: ATTRIBUTE_PrDM IGNORED: ATTRIBUTE_DEPTH IGNORED: ATTRIBUTE_spar IGNORED: ATTRIBUTE_Sbeox0ML/L IGNORED: ATTRIBUTE_turb IGNORED: ATTRIBUTE_STATION IGNORED: ATTRIBUTE_conductivity IGNORED: ATTRIBUTE_Sbeox0PS IGNORED: ATTRIBUTE_par IGNORED: ATTRIBUTE_fl-eco-afl IGNORED: ATTRIBUTE_density IGNORED: ATTRIBUTE_CStarTr0 IGNORED: ATTRIBUTE_sal IGNORED: ATTRIBUTE_Sbeox0Mg/L Number of rows removed due to not enough metadata: 0 Returning 72 rows! Processing: metadata_folder/294_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 165 rows! Processing: metadata_folder/174_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! TermsofPosition: not applicable: missing value DOIDCommonName: ischemic stroke: missing value ComorbidityListDOIDIndex: nan: missing value DOID:10763;DOID6713: missing value Number of rows removed due to not enough metadata: 0 Returning 22 rows! Processing: metadata_folder/MSV000093184.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: control sample: missing value nan: missing value not applicable: missing value UBERONBodyPartName: not specified: missing value : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: host_body_habitat IGNORED: genotype_gender_age IGNORED: genotype IGNORED: well_id IGNORED: katharoseq_cell_count IGNORED: sub_project IGNORED: host_subject_id IGNORED: run IGNORED: host_scientific_name IGNORED: subproject_verbose IGNORED: empo_3 IGNORED: scientific_name IGNORED: host_age_units IGNORED: katharoseq_strain IGNORED: host_body_site IGNORED: host_weight_units IGNORED: well_id_96 IGNORED: number_on_plate IGNORED: time_point IGNORED: ATTRIBUTE_mouse_gender IGNORED: ATTRIBUTE_mouse_genotype IGNORED: mouse_id IGNORED: sample_handling IGNORED: sample_handling.1 IGNORED: empo_2 IGNORED: katharo_strains IGNORED: katharoseq_aliquot_volume_ul IGNORED: taxon_id IGNORED: env_package IGNORED: tube_id IGNORED: scrub_control IGNORED: sample_name_qiita IGNORED: ATTRIBUTE_subproject IGNORED: ATTRIBUTE_mouse_treatment IGNORED: ATTRIBUTE_diet_intervention IGNORED: physical_specimen_location IGNORED: volume IGNORED: genotype_treatment IGNORED: sample_name IGNORED: host_taxid IGNORED: elevation IGNORED: physical_specimen_remaining IGNORED: host_body_product IGNORED: title IGNORED: ATTRIBUTE_host_age IGNORED: submitted_mak_plate IGNORED: Batch IGNORED: katharoseq_plate_number IGNORED: host_weight IGNORED: geo_loc_name IGNORED: collection_timestamp IGNORED: qiita_study_id IGNORED: empo_4 IGNORED: latitude IGNORED: ATTRIBUTE_sex IGNORED: cell_count IGNORED: empo_1 IGNORED: env_feature IGNORED: description IGNORED: dna_extracted IGNORED: ATTRIBUTE_mouse_age IGNORED: SampleType_QCMXP IGNORED: longitude IGNORED: genotype_diet IGNORED: env_material IGNORED: host_life_stage IGNORED: Order IGNORED: genotype_diet_gender IGNORED: ATTRIBUTE_host_age_numeric IGNORED: ATTRIBUTE_sample_type IGNORED: host_common_name IGNORED: env_biome IGNORED: plate IGNORED: katharoseq_batch_information IGNORED: sample_name_original IGNORED: plate_well Number of rows removed due to not enough metadata: 0 Returning 750 rows! Processing: metadata_folder/345_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_BiologicalSex Number of rows removed due to not enough metadata: 0 Returning 88 rows! Processing: metadata_folder/47_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 56 rows! Processing: metadata_folder/216_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 188 rows! Processing: metadata_folder/350_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 99 rows! Processing: metadata_folder/52_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value LatitudeandLongitude: 55.687488;12.57301: missing value Number of rows removed due to not enough metadata: 0 Returning 175 rows! Processing: metadata_folder/203_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/371_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: Bl21: missing value : missing value Bl22: missing value Bl23: missing value Bl24: missing value Bl25: missing value Bl26: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_SampleType Number of rows removed due to not enough metadata: 0 Returning 80 rows! Processing: metadata_folder/73_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: 41.8719 N, 12.5674 E: missing value Number of rows removed due to not enough metadata: 0 Returning 60 rows! Processing: metadata_folder/222_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value IGNORED: ATTRIBUTE_Collection Site IGNORED: ATTRIBUTE_Clade Number of rows removed due to not enough metadata: 0 Returning 388 rows! Processing: metadata_folder/364_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value SampleCollectionMethod: not specified: missing value SampleExtractionMethod: not specified: missing value MassSpectrometer: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not specified: missing value HealthStatus: not collected: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 36 rows! Processing: metadata_folder/66_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 454 rows! Processing: metadata_folder/237_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 124937|Barnebya harleyi: 124937|Barnebya 151868|Ptilochaeta densiflora: 151868|Ptilochaeta 151835|Hiraea restingae: 151835|Hiraea not applicable: missing value MassSpectrometer: Xevo G2 XS Tof|MS:1002729: Xevo G2-XS Tof|MS:1002729 BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 20 rows! Processing: metadata_folder/155_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not applicable: missing value UBERONBodyPartName: gall bladder: gallbladder TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 224 rows! Processing: metadata_folder/208_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/59_gnps_metadata.tsv filename: MISSING. STOPPING INTERPRETATION! Processing: metadata_folder/140_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 379 Returning 0 rows! Processing: metadata_folder/153_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not specified: missing value 75988|Pachymedusa dacnicolor: 75988|Agalychnis dacnicolor 41691|Oxyura jamaicensis: 41691|Cygnus melancoryphus 704175|Phoenicoparrus minor: 704175|Phoeniconaias minor 202946|Apteryx australis mantelli: 202946|Apteryx mantelli mantelli : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not collected: missing value not applicable: missing value UBERONBodyPartName: gall bladder: gallbladder : missing value TermsofPosition: not applicable: missing value HealthStatus: not collected: missing value not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not specified: missing value not applicable: missing value LatitudeandLongitude: not recorded: missing value not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 96 rows! Processing: metadata_folder/348_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not specified: missing value : missing value BiologicalSex: not specified: missing value UBERONBodyPartName: not specified: missing value : missing value TermsofPosition: not specified: missing value HealthStatus: not specified: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not specified: missing value LatitudeandLongitude: not specified: missing value IGNORED: SubjectIdentifierAsRecorded.1 Number of rows removed due to not enough metadata: 0 Returning 170 rows! Processing: metadata_folder/146_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 6 rows! Processing: metadata_folder/224_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not collected: missing value LatitudeandLongitude: not applicable : missing value Number of rows removed due to not enough metadata: 0 Returning 21 rows! Processing: metadata_folder/179_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not collected: missing value IGNORED: Info_Drug_CanSeeDrugThroughPackaging IGNORED: ATTRIBUTE_Rep_Day IGNORED: rep_measure IGNORED: Info_Package_DrugsperPackage IGNORED: Info_Drug_Color IGNORED: Info_Label_Dose_mg IGNORED: Info_Label_Manufacturer IGNORED: Cbind_Sample_ID IGNORED: Drug_ID IGNORED: Info_Drug_IdentifyingMarks IGNORED: ATTRIBUTE_API IGNORED: Info_Package_NumberofPackagesProvided IGNORED: Info_Drug_ManufacturedDate IGNORED: Info_Drug_Form_TabletorCapsule IGNORED: API_Drug IGNORED: ATTRIBUTE_mode IGNORED: Drug_ID_AsReported IGNORED: Info_Label_Drug_Name IGNORED: Info_Label_Ingredients_Listed IGNORED: Package_ID IGNORED: API_Drug2 IGNORED: Info_Drug_ExpirationDate IGNORED: ATTRIBUTE_Info_Label_Brand Number of rows removed due to not enough metadata: 0 Returning 330 rows! Processing: metadata_folder/299_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 9 Returning 264 rows! Processing: metadata_folder/377_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 8 rows! Processing: metadata_folder/75_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: 32.7157 N, 117.1611 W: missing value Number of rows removed due to not enough metadata: 0 Returning 4 rows! Processing: metadata_folder/231_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_Change_mouse_weight IGNORED: ATTRIBUTE_Study_Day IGNORED: ATTRIBUTE_Mouse_weight IGNORED: ATTRIBUTE_Diet IGNORED: ATTRIBUTE_Birth date IGNORED: ATTRIBUTE_cage_no IGNORED: ATTIBUTE_mouse_no Number of rows removed due to not enough metadata: 0 Returning 240 rows! Processing: metadata_folder/362_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: Bacteria: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: ML import: not available: missing value Number of rows removed due to not enough metadata: 0 Returning 100 rows! Processing: metadata_folder/60_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleExtractionMethod: not specified: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not specified: missing value HealthStatus: not collected: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not collected: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 178 rows! Processing: metadata_folder/210_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! filename: Blank_2.raw: not allowed Blank_3.raw: not allowed C1.raw: not allowed C2.raw: not allowed Fen_2_1.raw: not allowed Fen_2_2.raw: not allowed Fen_4_1.raw: not allowed Fen_4_2.raw: not allowed QC_1.raw: not allowed Tasa300_1.raw: not allowed Tasa_300_2.raw: not allowed Tasa80_1.raw: not allowed Tasa80_2.raw: not allowed blank_0.raw: not allowed blank_1.raw: not allowed blank_out.raw: not allowed SampleTypeSub1: not applicable: missing value NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value IonizationSourceAndPolarity: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 16 rows! Processing: metadata_folder/343_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_refchem IGNORED: ATTRIBUTE_sample_type IGNORED: ATTRIBUTE_incubationtime IGNORED: ATTRIBUTE_NCBITaxonomy Number of rows removed due to not enough metadata: 0 Returning 228 rows! Processing: metadata_folder/41_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 36 rows! Processing: metadata_folder/158_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value sleep deprivation: missing value ComorbidityListDOIDIndex: not applicable: missing value no disease reported: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 556 rows! Processing: metadata_folder/205_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 1 rows! Processing: metadata_folder/356_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 19 rows! Processing: metadata_folder/54_gnps_metadata.tsv SampleType: ADDED! SampleTypeSub1: ADDED! NCBITaxonomy: ADDED! YearOfAnalysis: ADDED! SampleCollectionMethod: ADDED! SampleExtractionMethod: ADDED! InternalStandardsUsed: ADDED! MassSpectrometer: ADDED! IonizationSourceAndPolarity: ADDED! ChromatographyAndPhase: ADDED! SubjectIdentifierAsRecorded: ADDED! AgeInYears: ADDED! BiologicalSex: ADDED! UBERONBodyPartName: ADDED! TermsofPosition: ADDED! HealthStatus: ADDED! DOIDCommonName: ADDED! ComorbidityListDOIDIndex: ADDED! SampleCollectionDateandTime: ADDED! Country: ADDED! HumanPopulationDensity: ADDED! LatitudeandLongitude: ADDED! DepthorAltitudeMeters: ADDED! qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! IGNORED: Analysis_SampleExtractionMethod IGNORED: Analysis_IonizationSourceAndPolarity IGNORED: ATTRIBUTE_Curated_SampleType IGNORED: ATTRIBUTE_Subject_Sex IGNORED: Curated_Comorbidity_ListDOIDs IGNORED: ATTRIBUTE_Subject_HumanPopulationDensity IGNORED: Analysis_MSRowID IGNORED: Analysis_PlateNumber IGNORED: Analysis_YearOfAnalysis IGNORED: ATTRIBUTE_Curated_BodyPartOntologyName IGNORED: ATTRIBUTE_Curated_SampleType_Sub1 IGNORED: ATTRIBUTE_Curated_DiseaseOntologyIndex IGNORED: Curated_DiseaseCommonName IGNORED: Study_SampleTypeasRecorded IGNORED: Analysis_ChromatographyAndPhase IGNORED: ATTRIBUTE_Curated_BodyPartOntologyIndex IGNORED: Study_UniqueSubjectID IGNORED: ATTRIBUTE_Genotype IGNORED: ATTRIBUTE_Analysis_MassSpectrometer IGNORED: Analysis_PlateRowID IGNORED: Analysis_InternalStandardsUsed IGNORED: ATTRIBUTE_Subject_LifeStage IGNORED: Study_TubeID Number of rows removed due to not enough metadata: 133 Returning 0 rows! Processing: metadata_folder/369_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 1423688|Bacillus pumilus: 1423688|Bacillus pumilus INR7 1404|Bacillus megaterium: 1404|Priestia megaterium BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 108 rows! Processing: metadata_folder/287_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 4 Returning 52 rows! Processing: metadata_folder/167_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not collected: missing value LatitudeandLongitude: not applicable : missing value Number of rows removed due to not enough metadata: 0 Returning 21 rows! Processing: metadata_folder/292_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 240 rows! Processing: metadata_folder/172_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value DOIDCommonName: no disease reported: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 64 rows! Processing: metadata_folder/278_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 68 rows! Processing: metadata_folder/198_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 122 rows! Processing: metadata_folder/125_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: Xevo G2 XS Tof|MS:1002729: Xevo G2-XS Tof|MS:1002729 IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 192 rows! Processing: metadata_folder/420_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 40 rows! Processing: metadata_folder/94_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value circadian rhythm disorders: missing value ComorbidityListDOIDIndex: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 88 rows! Processing: metadata_folder/396_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not specified: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value MassSpectrometer: not specified: missing value ChromatographyAndPhase: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 29 rows! Processing: metadata_folder/29_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 140 rows! Processing: metadata_folder/130_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: Unnamed: 0 IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 77 rows! Processing: metadata_folder/81_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not specified: missing value : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_Colony_ID IGNORED: ATTRIBUTE_cultivar_ITS_seqID IGNORED: ATTRIBUTE_Sample_Location IGNORED: ATTRIBUTE_Sample_ID IGNORED: ATTRIBUTE_Sample_Latitude IGNORED: ATTRIBUTE_metagenome_seqID IGNORED: ATTRIBUTE_Sample_Longitude IGNORED: ATTRIBUTE_sample_type Number of rows removed due to not enough metadata: 0 Returning 251 rows! Processing: metadata_folder/383_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 8 rows! Processing: metadata_folder/301_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 4 Returning 24 rows! Processing: metadata_folder/252_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not specified: missing value MassSpectrometer: not specified: missing value BiologicalSex: not specified: missing value UBERONBodyPartName: not specified: missing value TermsofPosition: not specified: missing value HealthStatus: not specified: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 8 rows! Processing: metadata_folder/16_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 120 Returning 60 rows! Processing: metadata_folder/314_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 197796|lantago asiatica: 197796|Plantago asiatica 23810|Ailanthus altissima: missing value 152358|Cocculus orbiculatus: 152358|Nephroia orbiculata 362646|Rhaponticum uniflorum: 362646|Leuzea uniflora 649195|Amomum kravanh: 649195|Amomum krervanh 312531|Peucedanum praeruptorum: 312531|Kitagawia praeruptora 43166|Citrus aurantium: 43166|Citrus x aurantium 290845 |Acer pictum: 290845|Acer pictum 135200|Schizonepeta tenuifolia: 2849020|Schizonepeta tenuifolia 252867|Lanxangia tsaoko: 252867|Lanxangia tsao-ko 29656|Spirodela polyrrhiza: 29656|Spirodela polyrhiza I58944|Iris domestica: 58944|Iris domestica MassSpectrometer: Xevo G2 XS Tof|MS:1002729: Xevo G2-XS Tof|MS:1002729 BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 674 rows! Processing: metadata_folder/MSV000094560.tsv NCBITaxonomy: : missing value SampleExtractionMethod: Not Applicable: missing value InternalStandardsUsed: biotin: missing value MassSpectrometer: Orbitrap IQ-X|MS:1003411: missing value ChromatographyAndPhase: reverse phase (porous graphitic carbon): missing value BiologicalSex: Not Applicable: missing value UBERONBodyPartName: : missing value Not Applicable: missing value TermsofPosition: Not Applicable: missing value HealthStatus: Not Applicable: missing value DOIDCommonName: Not Applicable: missing value ComorbidityListDOIDIndex: Not Applicable: missing value HumanPopulationDensity: Not Applicable: missing value LatitudeandLongitude: Not Applicable: missing value ENVOEnvironmentBiome: Not Applicable: missing value Traceback (most recent call last): File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/conda/conda_env-88e285eea3d03e468983bcd88c95c51f/lib/python3.8/site-packages/pandas/core/indexes/base.py", line 3653, in get_loc return self._engine.get_loc(casted_key) File "pandas/_libs/index.pyx", line 147, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/index.pyx", line 176, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/hashtable_class_helper.pxi", line 7080, in pandas._libs.hashtable.PyObjectHashTable.get_item File "pandas/_libs/hashtable_class_helper.pxi", line 7088, in pandas._libs.hashtable.PyObjectHashTable.get_item KeyError: 'NCBIRank' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py", line 307, in df = complete_and_fill_REDU_table(df, File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py", line 194, in complete_and_fill_REDU_table df['NCBIRank'].fillna(missing_value, inplace=True) File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/conda/conda_env-88e285eea3d03e468983bcd88c95c51f/lib/python3.8/site-packages/pandas/core/frame.py", line 3761, in __getitem__ indexer = self.columns.get_loc(key) File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/conda/conda_env-88e285eea3d03e468983bcd88c95c51f/lib/python3.8/site-packages/pandas/core/indexes/base.py", line 3655, in get_loc raise KeyError(key) from err KeyError: 'NCBIRank'