Starting tsv processing. Processing 435 files Processing: metadata_folder/122_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 129 rows! Processing: metadata_folder/391_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: 1456794|Aspergillus fumigatus: 1456794|Aspergillus fumigatus GA-L7 SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 6 rows! Processing: metadata_folder/137_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 24 rows! Processing: metadata_folder/5_gnps_metadata.tsv MassiveID: MISSING. STOPPING INTERPRETATION! Processing: metadata_folder/339_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! filename: blank.mzXML.1: not allowed blank.mzXML.2: not allowed blank.mzXML.3: not allowed blank.mzXML.4: not allowed blank.mzXML.5: not allowed QC.mzXML.1: not allowed QC.mzXML.2: not allowed QC.mzXML.3: not allowed QC.mzXML.4: not allowed QC.mzXML.5: not allowed SampleTypeSub1: not applicable: missing value TermsofPosition: LA: missing value RA: missing value LVT: missing value LVB: missing value RVT: missing value RVB: missing value blank: missing value QC: missing value 6-mix: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: 29.710762| -95.396220: missing value Number of rows removed due to not enough metadata: 0 Returning 2239 rows! Processing: metadata_folder/384_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 6 rows! Processing: metadata_folder/306_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 3 Returning 36 rows! Processing: metadata_folder/255_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 1 Returning 11 rows! Processing: metadata_folder/71_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not specified: missing value HealthStatus: not specified: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not specified: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 433 rows! Processing: metadata_folder/108_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value sleep deprivation: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 98 rows! Processing: metadata_folder/418_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_Part IGNORED: ATTRIBUTE_Process IGNORED: ATTRIBUTE_City Number of rows removed due to not enough metadata: 0 Returning 17 rows! Processing: metadata_folder/240_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_sampletype Number of rows removed due to not enough metadata: 0 Returning 22 rows! Processing: metadata_folder/64_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value ComorbidityListDOIDIndex: no disease reported: missing value not specified: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 488 rows! Processing: metadata_folder/332_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_refchem IGNORED: ATTRIBUTE_NCBITaxonomy IGNORED: ATTRIBUTE_sample_type IGNORED: ATTRIBUTE_incubationtime Number of rows removed due to not enough metadata: 0 Returning 36 rows! Processing: metadata_folder/181_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 64 rows! Processing: metadata_folder/45_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: Unnamed: 0 IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 264 rows! Processing: metadata_folder/261_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value Chronic Illness: missing value Healthy: missing value DOIDCommonName: not applicable: missing value mental depression: missing value no disease reported: missing value ComorbidityListDOIDIndex: not applicable: missing value no disease reported: missing value DOID:1596: missing value DOID:526: missing value Number of rows removed due to not enough metadata: 0 Returning 200 rows! Processing: metadata_folder/MSV000094097.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value not collected: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not collected: missing value LatitudeandLongitude: nan: missing value IGNORED: id IGNORED: ATTRIBUTE_Diet Number of rows removed due to not enough metadata: 0 Returning 264 rows! Processing: metadata_folder/327_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 1760|Actinobacteria: 1760|Actinomycetes SampleCollectionMethod: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 19 rows! Processing: metadata_folder/129_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 36 Returning 36 rows! Processing: metadata_folder/194_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value MassSpectrometer: Agilent GC 7820A-MS 5977B|not available: missing value BiologicalSex: not specified: missing value not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not specified: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: 32.04 N 34.82 E: missing value nan: missing value Number of rows removed due to not enough metadata: 0 Returning 159 rows! Processing: metadata_folder/50_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not specified: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 533 rows! Processing: metadata_folder/274_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 15 rows! Processing: metadata_folder/413_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_City_and_processing IGNORED: ATTRIBUTE_Part Number of rows removed due to not enough metadata: 0 Returning 17 rows! Processing: metadata_folder/116_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: nan: missing value ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 7 Returning 57 rows! Processing: metadata_folder/318_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value not specified: missing value DOIDCommonName: not applicable: missing value not specified: missing value ComorbidityListDOIDIndex: not applicable: missing value not specified: missing value HumanPopulationDensity: not specified: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 1107 rows! Processing: metadata_folder/103_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value right: missing value middle: missing value left: missing value HealthStatus: not applicable: missing value DOIDCommonName: no disease reported: missing value not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 1250 rows! Processing: metadata_folder/406_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: 135461|Bacillus subtilis: 135461|Bacillus subtilis subsp. subtilis : missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/209_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value LatitudeandLongitude: -33.9986|+25.70955: missing value -33.97321667|+25.683288333: missing value -33.97321667|+25.683288334: missing value -33.97321667|+25.683288335: missing value -33.97321667|+25.683288336: missing value -33.97321667|+25.683288337: missing value -33.97321667|+25.683288338: missing value -33.9978|+25.70817: missing value -33.9742|+25.68111667: missing value -33.97321667|+25.68328333: missing value -33.98278333|+25.6941: missing value -33.99778333|+25.70816667: missing value -33.84548|+25.81663: missing value IGNORED: ATTRIBUTE_Bioactivity IGNORED: ATTRIBUTE_CollectionID IGNORED: LocalArea IGNORED: ATTRIBUTE_CollectionSite IGNORED: Common Name IGNORED: DNASample IGNORED: ATTRIBUTE_Genus IGNORED: ATTRIBUTE_YearCollected Number of rows removed due to not enough metadata: 0 Returning 275 rows! Processing: metadata_folder/90_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! TermsofPosition: not applicable: missing value DOIDCommonName: no disease reported: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 223 rows! Processing: metadata_folder/154_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 119947|Alternaria: 119947|Alternaria sect. Ulocladium BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: na: missing value Number of rows removed due to not enough metadata: 0 Returning 503 rows! Processing: metadata_folder/85_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 126 rows! Processing: metadata_folder/141_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 19 Returning 19 rows! Processing: metadata_folder/38_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 44 rows! Processing: metadata_folder/223_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value not collected: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value not specified: missing value HealthStatus: not applicable: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not applicable: missing value IGNORED: MS_column Number of rows removed due to not enough metadata: 0 Returning 168 rows! Processing: metadata_folder/370_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 284492|Vachellia collinsii : 284492|Vachellia collinsii SampleCollectionMethod: not specified: missing value MassSpectrometer: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value IGNORED: ATTRIBUTE_SampleType IGNORED: ATTRIBUTE_InyectionNumber Number of rows removed due to not enough metadata: 0 Returning 32 rows! Processing: metadata_folder/236_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 135635|Streptopelia senegalensis: 135635|Spilopelia senegalensis 121526|Criniferoides leucogaster: 121526|Corythaixoides leucogaster 54498|Gallirallus owstoni: missing value 9111|Anthropoides virgo: 9111|Grus virgo 75838|Anas clypeata: 75838|Spatula clypeata not specified: missing value 1088058|Przewalskium albirostris: 1088058|Cervus albirostris 101278|Nycticebus pygmaeus: 101278|Xanthonycticebus pygmaeus 9493|Callithrix pygmaea: 9493|Cebuella pygmaea 9829|Pecari tajacu: 9829|Dicotyles tajacu 704175|Phoenicoparrus minor: 704175|Phoeniconaias minor 75840|Anas cyanoptera: 75840|Spatula cyanoptera 8865|Cyanochen cyanopterus: 8865|Cyanochen cyanoptera 424585|Ailurus fulgens styani: 424585|Ailurus styani 210647|Panthera leo persica: 210647|Helogale parvula 89252|Equus burchellii quagga: 89252|Equus quagga burchellii 387824|Circus cyaneus hudsonius: missing value 378071|Stegostoma fasciatum: missing value 79690|Dasyatis sabina: 79690|Hypanus sabinus 586789|Centropyge loricula: 586789|Centropyge loriculus 229058|Ostracion cubicus: 229058|Ostracion cubicum 126867|Gulosus aristotelis: 126867|Phalacrocorax aristotelis 52221|elgaria: 52221|Elgaria 8355|Acrantophis madagascariensis: 8355|Xenopus laevis 52670|austrofundulus limnaeus: 52670|Austrofundulus limnaeus 717477|Heloderma horridum exasperatum: 717477|Heloderma exasperatum 8404|Rana pipiens: 8404|Lithobates pipiens 322500|Phrynobatrachus accraensis: missing value 932683|Harpactes mackloti: 932683|Apalharpactes mackloti 1843784|Apagesoma australis: 1843784|Apagesoma australe 512567|Xenochrophis piscator: missing value 8400|Rana catesbeiana: 8400|Aquarana catesbeiana 261672|Ptychadena schubotzi: 261672|Ptychadena tellinii 201311|Garrulax ocellatus: 201311|Ianthocincla ocellata 46218|Coturnix chinensis: 46218|Excalfactoria chinensis 302529|Calyptorhynchus funereus: 302529|Zanda funerea 240734|Pogonornis dubius: 240734|Lybius dubius 471713|Cacatua leadbeateri: 471713|Lophochroa leadbeateri 58209|Tangara episcopus: 58209|Thraupis episcopus 1948888|Kittacincla malabarica: 1948888|Copsychus malabaricus 56069|Nannopterum auritus: 56069|Phalacrocorax auritus 1171711|Anthropoides paradiseus: 1171711|Grus paradisea 9115|Grus vipio: missing value 54570|Aramides cajanea: missing value 79631|Hydrobates furcatus: 79631|Oceanodroma furcata 202946|Apteryx australis mantelli: 202946|Apteryx mantelli mantelli : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: gall bladder: gallbladder not specified: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value IGNORED: ATTRIBUTE_Order IGNORED: ATTRIBUTE_Plate IGNORED: ATTRIBUTE_Class IGNORED: ATTRIBUTE_Phylum IGNORED: ATTRIBUTE_Kingdom IGNORED: ATTRIBUTE_Genus IGNORED: ATTRIBUTE_Family Number of rows removed due to not enough metadata: 0 Returning 1877 rows! Processing: metadata_folder/365_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 99 rows! Processing: metadata_folder/217_gnps_metadata.tsv MassiveID: MISSING. STOPPING INTERPRETATION! Processing: metadata_folder/33_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 28 Returning 14 rows! Processing: metadata_folder/344_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified: missing value 230597|Schefflera delavayi: 230597|Heptapleurum delavayi 50346|Saccharum arundinaceum: 50346|Tripidium arundinaceum 312427|Caloncoba welwitschii: 2708920|Caloncoba welwitschii 1321794|Chrysophyllum subnudum: missing value 260718|Phyllanthus acidus: 260718|Cicca acida 155018|Anogeissus acuminata: missing value 459110|Ailanthus triphysa: 459110|Ailanthus triphysus 319571|Phyllanthus casticum: 319571|Kirganelia castica 46415|Schefflera arboricola: 46415|Heptapleurum arboricola 1225699|Solori scandens: 1225699|Brachypterum scandens 1784723|Desmodium heterophyllum: 1784723|Grona heterophylla 296036|Phyllanthus emblica: 296036|Emblica officinalis 152432|Shorea roxburghii: 152432|Anthoshorea roxburghii : missing value BiologicalSex: not specified: missing value UBERONBodyPartName: not specified: missing value : missing value TermsofPosition: not specified: missing value HealthStatus: not specified: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not specified: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 3840 rows! Processing: metadata_folder/202_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/26_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 60 Returning 30 rows! Processing: metadata_folder/351_gnps_metadata.tsv MassiveID: MISSING. STOPPING INTERPRETATION! Processing: metadata_folder/19_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 634 Returning 181 rows! Processing: metadata_folder/280_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 114 rows! Processing: metadata_folder/160_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value IGNORED: ATTRIBUTE_SampleType IGNORED: ATTRIBUTE_sampling_spot_radius IGNORED: ATTRIBUTE_y IGNORED: ATTRIBUTE_x IGNORED: ATTRIBUTE_z IGNORED: ATTRIBUTE_Samplelocation Number of rows removed due to not enough metadata: 0 Returning 227 rows! Processing: metadata_folder/MSV000095697.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: nan: missing value : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value IGNORED: ATTRIBUTE_par IGNORED: ATTRIBUTE_Sbeox0ML/L IGNORED: ATTRIBUTE_conductivity IGNORED: ATTRIBUTE_Sbeox0Mg/L IGNORED: ATTRIBUTE_CStarTr0 IGNORED: ATTRIBUTE_temp IGNORED: ATTRIBUTE_PrDM IGNORED: ATTRIBUTE_STATION IGNORED: ATTRIBUTE_DEPTH IGNORED: ATTRIBUTE_Sbeox0PS IGNORED: ATTRIBUTE_turb IGNORED: ATTRIBUTE_sal IGNORED: ATTRIBUTE_fl-eco-afl IGNORED: ATTRIBUTE_spar IGNORED: ATTRIBUTE_density Number of rows removed due to not enough metadata: 0 Returning 72 rows! Processing: metadata_folder/295_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 380 Returning 164 rows! Processing: metadata_folder/175_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! TermsofPosition: not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value Number of rows removed due to not enough metadata: 0 Returning 26 rows! Processing: metadata_folder/MSV000093184.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: control sample: missing value nan: missing value not applicable: missing value UBERONBodyPartName: not specified: missing value : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: plate IGNORED: sample_handling IGNORED: title IGNORED: qiita_study_id IGNORED: collection_timestamp IGNORED: well_id IGNORED: number_on_plate IGNORED: katharoseq_plate_number IGNORED: scientific_name IGNORED: env_feature IGNORED: plate_well IGNORED: sample_name_qiita IGNORED: run IGNORED: env_biome IGNORED: host_common_name IGNORED: katharoseq_cell_count IGNORED: Order IGNORED: env_package IGNORED: empo_1 IGNORED: sample_handling.1 IGNORED: ATTRIBUTE_host_age IGNORED: ATTRIBUTE_sex IGNORED: genotype_treatment IGNORED: cell_count IGNORED: Batch IGNORED: empo_2 IGNORED: genotype_gender_age IGNORED: ATTRIBUTE_mouse_age IGNORED: taxon_id IGNORED: genotype_diet_gender IGNORED: host_weight_units IGNORED: geo_loc_name IGNORED: ATTRIBUTE_mouse_treatment IGNORED: submitted_mak_plate IGNORED: sample_name_original IGNORED: host_weight IGNORED: host_age_units IGNORED: ATTRIBUTE_diet_intervention IGNORED: ATTRIBUTE_subproject IGNORED: time_point IGNORED: well_id_96 IGNORED: latitude IGNORED: host_subject_id IGNORED: SampleType_QCMXP IGNORED: elevation IGNORED: mouse_id IGNORED: longitude IGNORED: ATTRIBUTE_sample_type IGNORED: katharoseq_batch_information IGNORED: genotype_diet IGNORED: host_life_stage IGNORED: empo_3 IGNORED: genotype IGNORED: scrub_control IGNORED: physical_specimen_location IGNORED: host_scientific_name IGNORED: physical_specimen_remaining IGNORED: host_body_product IGNORED: katharoseq_aliquot_volume_ul IGNORED: subproject_verbose IGNORED: sample_name IGNORED: ATTRIBUTE_mouse_gender IGNORED: katharoseq_strain IGNORED: dna_extracted IGNORED: env_material IGNORED: ATTRIBUTE_mouse_genotype IGNORED: host_body_site IGNORED: host_body_habitat IGNORED: tube_id IGNORED: empo_4 IGNORED: sub_project IGNORED: volume IGNORED: host_taxid IGNORED: ATTRIBUTE_host_age_numeric IGNORED: katharo_strains IGNORED: description Number of rows removed due to not enough metadata: 0 Returning 750 rows! Processing: metadata_folder/228_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not specified|Staphylococcus aureus JE3: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_SampleType Number of rows removed due to not enough metadata: 0 Returning 139 rows! Processing: metadata_folder/286_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 17 rows! Processing: metadata_folder/166_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 52 rows! Processing: metadata_folder/368_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! UBERONBodyPartName: not specified: missing value TermsofPosition: not specified: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 20 rows! Processing: metadata_folder/293_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 1 Returning 1 rows! Processing: metadata_folder/173_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! TermsofPosition: not applicable: missing value DOIDCommonName: ischemic stroke: missing value ComorbidityListDOIDIndex: nan: missing value DOID:10763;DOID6713: missing value Number of rows removed due to not enough metadata: 0 Returning 22 rows! Processing: metadata_folder/342_gnps_metadata.tsv MassiveID: MISSING. STOPPING INTERPRETATION! Processing: metadata_folder/88_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 119 rows! Processing: metadata_folder/211_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 185 rows! Processing: metadata_folder/35_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not collected: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 12 rows! Processing: metadata_folder/357_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 27 rows! Processing: metadata_folder/204_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value NCBITaxonomy: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/20_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 1050 rows! Processing: metadata_folder/159_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value not collected: missing value LatitudeandLongitude: 32.842;-117.258: missing value Number of rows removed due to not enough metadata: 0 Returning 384 rows! Processing: metadata_folder/376_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 8 rows! Processing: metadata_folder/178_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not collected: missing value : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 77 rows! Processing: metadata_folder/298_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: Xevo G2 XS Tof|MS:1002729: Xevo G2-XS Tof|MS:1002729 IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 1 Returning 99 rows! Processing: metadata_folder/225_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: 4577|Zea mays L.: 4577|Zea mays : missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: food_fermented Number of rows removed due to not enough metadata: 0 Returning 9 rows! Processing: metadata_folder/363_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: Bacteria: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: ML import: not available: missing value Number of rows removed due to not enough metadata: 0 Returning 100 rows! Processing: metadata_folder/230_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not specified|Staphylococcus aureus JE3: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_SampleType Number of rows removed due to not enough metadata: 0 Returning 280 rows! Processing: metadata_folder/96_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value right: missing value middle: missing value left: missing value HealthStatus: not applicable: missing value DOIDCommonName: no disease reported: missing value not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 1250 rows! Processing: metadata_folder/152_gnps_metadata.tsv SampleType: ADDED! SampleTypeSub1: ADDED! NCBITaxonomy: ADDED! YearOfAnalysis: ADDED! SampleCollectionMethod: ADDED! SampleExtractionMethod: ADDED! InternalStandardsUsed: ADDED! MassSpectrometer: ADDED! IonizationSourceAndPolarity: ADDED! ChromatographyAndPhase: ADDED! SubjectIdentifierAsRecorded: ADDED! AgeInYears: ADDED! BiologicalSex: ADDED! UBERONBodyPartName: ADDED! TermsofPosition: ADDED! HealthStatus: ADDED! DOIDCommonName: ADDED! ComorbidityListDOIDIndex: ADDED! SampleCollectionDateandTime: ADDED! Country: ADDED! HumanPopulationDensity: ADDED! LatitudeandLongitude: ADDED! DepthorAltitudeMeters: ADDED! qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! IGNORED: ATTRIBUTE_Curated_DiseaseOntologyIndex IGNORED: Curated_DiseaseCommonName IGNORED: Curated_Comorbidity_ListDOIDs IGNORED: Study_SampleTermsofPosition IGNORED: ATTRIBUTE_Subject_Urine_Creatinine_micromol_per_Liter IGNORED: ATTRIBUTE_Curated_BodyPartOntologyName IGNORED: Analysis_SampleCollectionMethod IGNORED: Analysis_SampleExtractionMethod IGNORED: ATTRIBUTE_Curated_BodyPartOntologyIndex IGNORED: Analysis_InternalStandardsUsed IGNORED: ATTRIBUTE_Curated_SampleType_Sub1 IGNORED: Analysis_IonizationSourceAndPolarity IGNORED: Study_SampleTypeasRecorded IGNORED: ATTRIBUTE_Subject_Diabetes IGNORED: ATTRIBUTE_Subject_antihypertensive_drug_classes_number IGNORED: Study_TimepointMin IGNORED: ATTRIBUTE_Subject_Urine_GFR IGNORED: Study_UniqueSubjectID IGNORED: ATTRIBUTE_Subject_Sex IGNORED: ATTRIBUTE_Subject_HumanPopulationDensity IGNORED: ATTRIBUTE_Subject_Smoking IGNORED: Subject_Health IGNORED: Study_SubjectIdentifierAsRecorded IGNORED: Subject_Country IGNORED: Study_DayAsReported IGNORED: Analysis_ChromatographyAndPhase IGNORED: Filename_Filepath IGNORED: ATTRIBUTE_Curated_SampleType IGNORED: Study_DayRelative IGNORED: ATTRIBUTE_Subject_LifeStage IGNORED: Subject_AgeInYears IGNORED: Analysis_YearOfAnalysis IGNORED: ATTRIBUTE_Analysis_MassSpectrometer Number of rows removed due to not enough metadata: 26 Returning 0 rows! Processing: metadata_folder/83_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! BiologicalSex: not specified: missing value TermsofPosition: not applicable: missing value HealthStatus: not specified: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 143 rows! Processing: metadata_folder/147_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not specified|Euphorbia pithyusa ssp. cupanii: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not specified: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 14 rows! Processing: metadata_folder/349_gnps_metadata.tsv SampleCollectionDateandTime: ADDED! LatitudeandLongitude: ADDED! DepthorAltitudeMeters: ADDED! qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! TermsofPosition: not applicable: missing value DOIDCommonName: ischemic stroke: missing value ComorbidityListDOIDIndex: no disease reported: missing value IGNORED: ATTRIBUTE_Smoking IGNORED: ATTRIBUTE_Alchohol Number of rows removed due to not enough metadata: 0 Returning 100 rows! Processing: metadata_folder/415_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: not applicable: missing value 228215|Pleurotus eryngii ferulae: 228215|Pleurotus eryngii var. ferulae : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_Taxonomy IGNORED: SampleType1 IGNORED: ATTRIBUTE_ Percent of OMSW Number of rows removed due to not enough metadata: 0 Returning 61 rows! Processing: metadata_folder/110_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value circadian rhythm disorders: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 257 rows! Processing: metadata_folder/69_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 55 rows! Processing: metadata_folder/258_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: not applicable: missing value ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 4 Returning 114 rows! Processing: metadata_folder/105_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not applicable: missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not collected: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value no disease reported: missing value sleep deprivation: missing value ComorbidityListDOIDIndex: not applicable: missing value no disease reported: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 434 rows! Processing: metadata_folder/400_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not applicable: missing value NCBITaxonomy: 96241|Bacillus subtilis: 96241|Bacillus spizizenii : missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 2 rows! Processing: metadata_folder/8_gnps_metadata.tsv MassiveID: MISSING. STOPPING INTERPRETATION! Processing: metadata_folder/187_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value not specified: missing value SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not specified: missing value IGNORED: ATTRIBUTE_SampleDay IGNORED: ATTRIBUTE_SampleType Number of rows removed due to not enough metadata: 0 Returning 167 rows! Processing: metadata_folder/43_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 36 rows! Processing: metadata_folder/267_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value BiologicalSex: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 0 Returning 16 rows! Processing: metadata_folder/389_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleTypeSub1: not specified: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: nan: missing value TermsofPosition: nan: missing value HealthStatus: nan: missing value DOIDCommonName: nan: missing value ComorbidityListDOIDIndex: nan: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: nan: missing value Number of rows removed due to not enough metadata: 0 Returning 8 rows! Processing: metadata_folder/192_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 49 rows! Processing: metadata_folder/56_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value BiologicalSex: not collected: missing value not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: no disease reported: missing value not applicable: missing value ComorbidityListDOIDIndex: no disease reported: missing value not applicable: missing value HumanPopulationDensity: not collected: missing value not applicable: missing value LatitudeandLongitude: 42.28;-83.74: missing value 32.876878;-117.234459: missing value Number of rows removed due to not enough metadata: 0 Returning 342 rows! Processing: metadata_folder/272_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 465 Returning 93 rows! Processing: metadata_folder/321_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value : missing value 435590|Bacteroides vulgatus: 435590|Phocaeicola vulgatus ATCC 8482 349741|Akkermansia muciniphila: 349741|Akkermansia muciniphila ATCC BAA-835 391904|Bifidobacterium longum subsp. infantis: 391904|Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 SampleCollectionMethod: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value : missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not applicable: missing value IGNORED: ATTRIBUTE_coffee IGNORED: ATTRIBUTE_NCBITaxonomy IGNORED: ATTRIBUTE_sample_type IGNORED: ATTRIBUTE_chemmix IGNORED: ATTRIBUTE_incubationtime Number of rows removed due to not enough metadata: 0 Returning 112 rows! Processing: metadata_folder/253_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value SampleExtractionMethod: not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value Number of rows removed due to not enough metadata: 0 Returning 11 rows! Processing: metadata_folder/77_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: : missing value SampleCollectionMethod: not applicable: missing value not specified: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: : missing value TermsofPosition: not specified: missing value HealthStatus: not specified: missing value DOIDCommonName: not specified: missing value ComorbidityListDOIDIndex: not specified: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 238 rows! Processing: metadata_folder/300_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! SampleType: ML import: not available: missing value SampleTypeSub1: ML import: not available: missing value NCBITaxonomy: ML import: not available: missing value YearOfAnalysis: 1999: missing value SampleCollectionMethod: ML import: not available: missing value SampleExtractionMethod: ML import: not available: missing value InternalStandardsUsed: ML import: not available: missing value MassSpectrometer: ML import: not available: missing value IonizationSourceAndPolarity: ML import: not available: missing value ChromatographyAndPhase: ML import: not available: missing value BiologicalSex: ML import: not available: missing value UBERONBodyPartName: ML import: not available: missing value TermsofPosition: ML import: not available: missing value HealthStatus: ML import: not available: missing value DOIDCommonName: ML import: not available: missing value ComorbidityListDOIDIndex: ML import: not available: missing value Country: ML import: not available: missing value HumanPopulationDensity: ML import: not available: missing value LatitudeandLongitude: ML import: not available: missing value IGNORED: sample_name Number of rows removed due to not enough metadata: 15 Returning 4 rows! Processing: metadata_folder/246_gnps_metadata.tsv ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! NCBITaxonomy: not applicable: missing value BiologicalSex: not applicable: missing value UBERONBodyPartName: not applicable: missing value TermsofPosition: not applicable: missing value HealthStatus: not applicable: missing value DOIDCommonName: not applicable: missing value ComorbidityListDOIDIndex: not applicable: missing value HumanPopulationDensity: not applicable: missing value LatitudeandLongitude: not collected: missing value IGNORED: Attribute_E.coli IGNORED: Attribute_A.baylyi IGNORED: Attribute_E.carotovora IGNORED: Attribute_E.aerogenes IGNORED: Attribute_P.putida IGNORED: Attribute_ESKAPE IGNORED: Attribute_B.subtilis IGNORED: Attribute_S.epidermidis IGNORED: Unnamed: 29 IGNORED: Attribute_media Number of rows removed due to not enough metadata: 0 Returning 62 rows! Processing: metadata_folder/62_gnps_metadata.tsv qiita_sample_name: ADDED! ENVOEnvironmentBiome: ADDED! ENVOEnvironmentMaterial: ADDED! TermsofPosition: not applicable: missing value DOIDCommonName: no disease reported: missing value ComorbidityListDOIDIndex: no disease reported: missing value LatitudeandLongitude: not specified: missing value Number of rows removed due to not enough metadata: 0 Returning 1115 rows! Processing: metadata_folder/MSV000094560.tsv NCBITaxonomy: : missing value SampleExtractionMethod: Not Applicable: missing value InternalStandardsUsed: biotin: missing value MassSpectrometer: Orbitrap IQ-X|MS:1003411: missing value ChromatographyAndPhase: reverse phase (porous graphitic carbon): missing value BiologicalSex: Not Applicable: missing value UBERONBodyPartName: : missing value Not Applicable: missing value TermsofPosition: Not Applicable: missing value HealthStatus: Not Applicable: missing value DOIDCommonName: Not Applicable: missing value ComorbidityListDOIDIndex: Not Applicable: missing value HumanPopulationDensity: Not Applicable: missing value LatitudeandLongitude: Not Applicable: missing value ENVOEnvironmentBiome: Not Applicable: missing value Traceback (most recent call last): File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/conda/conda_env-88e285eea3d03e468983bcd88c95c51f/lib/python3.8/site-packages/pandas/core/indexes/base.py", line 3653, in get_loc return self._engine.get_loc(casted_key) File "pandas/_libs/index.pyx", line 147, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/index.pyx", line 176, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/hashtable_class_helper.pxi", line 7080, in pandas._libs.hashtable.PyObjectHashTable.get_item File "pandas/_libs/hashtable_class_helper.pxi", line 7088, in pandas._libs.hashtable.PyObjectHashTable.get_item KeyError: 'NCBIRank' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py", line 307, in df = complete_and_fill_REDU_table(df, File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py", line 194, in complete_and_fill_REDU_table df['NCBIRank'].fillna(missing_value, inplace=True) File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/conda/conda_env-88e285eea3d03e468983bcd88c95c51f/lib/python3.8/site-packages/pandas/core/frame.py", line 3761, in __getitem__ indexer = self.columns.get_loc(key) File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/conda/conda_env-88e285eea3d03e468983bcd88c95c51f/lib/python3.8/site-packages/pandas/core/indexes/base.py", line 3655, in get_loc raise KeyError(key) from err KeyError: 'NCBIRank'