Starting MWB2REDU script,..
  0%|          | 0/3128 [00:00<?, ?it/s]Processing  ST002436
No raw data detected. Ignoring ST002436
Processing  ST003453
Initiating REDU-table generation for AN005672
Rest length is 480
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..

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analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
Initiating REDU-table generation for AN005673
Rest length is 480
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..
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analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
Initiating REDU-table generation for AN005674
Rest length is 480
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..
Mapping potential matches:   0%|          | 0/480 [00:00<?, ?it/s][A
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Mapping potential matches:  99%|█████████▉| 477/480 [00:09<00:00, 51.43it/s][AMapping potential matches: 100%|██████████| 480/480 [00:09<00:00, 52.72it/s]analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
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/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  0%|          | 2/3128 [00:35<15:37:39, 18.00s/it]/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  0%|          | 6/3128 [00:38<4:26:32,  5.12s/it] /app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  0%|          | 8/3128 [00:41<3:21:19,  3.87s/it]
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tissue-A
20220917-POS-432-40-7D.raw
WWL
tissue-A
20220917-POS-433-C-7D.raw
WWL
tissue-A
20220917-POS-435-C-7D.raw
WWL
tissue-A
20220917-POS-442-25-7D.raw
WWL
tissue-A
20220917-POS-444-25-7D.raw
WWL
tissue-A
20220917-POS-448-C-7D.raw
WWL
tissue-A
20220917-POS-451-25-7D.raw
WWL
tissue-A
20220917-POS-453-C-7D.raw
WWL
tissue-A
20220917-POS-467-40-7D.raw
WWL
tissue-A
20220917-POS-472-C-7D.raw
WWL
tissue-A
20220917-POS-475-25-7D.raw
WWL
tissue-A
20220917-POS-477-25-7D.raw
WWL
tissue-A
20220917-POS-478-C-7D.raw
WWL
tissue-C8
20220708-POS-402-40-7D.raw
WWL
tissue-C8
20220708-POS-403-25-7D.raw
WWL
tissue-C8
20220708-POS-410-C-7D.raw
WWL
tissue-C8
20220708-POS-412-25-7D.raw
WWL
tissue-C8
20220708-POS-416-C-7D.raw
WWL
tissue-C8
20220708-POS-418-25-7D.raw
WWL
tissue-C8
20220708-POS-419-40-7D.raw
WWL
tissue-C8
20220708-POS-424-40-7D.raw
WWL
tissue-C8
20220708-POS-427-40-7D.raw
WWL
tissue-C8
20220708-POS-428-40-7D.raw
WWL
tissue-C8
20220708-POS-429-40-7D.raw
WWL
tissue-C8
20220708-POS-432-40-7D.raw
WWL
tissue-C8
20220708-POS-433-C-7D.raw
WWL
tissue-C8
20220708-POS-435-C-7D.raw
WWL
tissue-C8
20220708-POS-442-25-7D.raw
WWL
tissue-C8
20220708-POS-444-25-7D.raw
WWL
tissue-C8
20220708-POS-448-C-7D.raw
WWL
tissue-C8
20220708-POS-451-25-7D.raw
WWL
tissue-C8
20220708-POS-453-C-7D.raw
WWL
tissue-C8
20220708-POS-467-40-7D.raw
WWL
tissue-C8
20220708-POS-472-C-7D.raw
WWL
tissue-C8
20220708-POS-475-25-7D.raw
WWL
tissue-C8
20220708-POS-477-25-7D.raw
WWL
tissue-C8
20220708-POS-478-C-7D.raw
WWL
tissue-GC
20220808-402-40-7D.raw
WWL
tissue-GC
20220808-403-25-7D.raw
WWL
tissue-GC
20220808-410-C-7D.raw
WWL
tissue-GC
20220808-412-25-7D.raw
WWL
tissue-GC
20220808-416-C-7D.raw
WWL
tissue-GC
20220808-418-25-7D.raw
WWL
tissue-GC
20220808-419-40-7D.raw
WWL
tissue-GC
20220808-424-40-7D.raw
WWL
tissue-GC
20220808-427-40-7D.raw
WWL
tissue-GC
20220808-428-40-7D.raw
WWL
tissue-GC
20220808-429-40-7D.raw
WWL
tissue-GC
20220808-432-40-7D.raw
WWL
tissue-GC
20220808-433-C-7D.raw
WWL
tissue-GC
20220808-435-C-7D.raw
WWL
tissue-GC
20220808-442-25-7D.raw
WWL
tissue-GC
20220808-444-25-7D.raw
WWL
tissue-GC
20220808-448-C-7D.raw
WWL
tissue-GC
20220808-451-25-7D.raw
WWL
tissue-GC
20220808-453-C-7D.raw
WWL
tissue-GC
20220808-467-40-7D.raw
WWL
tissue-GC
20220808-472-C-7D.raw
WWL
tissue-GC
20220808-475-25-7D.raw
WWL
tissue-GC
20220808-477-25-7D.raw
WWL
tissue-GC
20220808-478-C-7D.raw
WWL
tissue-T3
20220712-NEG-402-40-7D.raw
WWL
tissue-T3
20220712-NEG-403-25-7D.raw
WWL
tissue-T3
20220712-NEG-410-C-7D.raw
WWL
tissue-T3
20220712-NEG-412-25-7D.raw
WWL
tissue-T3
20220712-NEG-416-C-7D.raw
WWL
tissue-T3
20220712-NEG-418-25-7D.raw
WWL
tissue-T3
20220712-NEG-419-40-7D.raw
WWL
tissue-T3
20220712-NEG-424-40-7D.raw
WWL
tissue-T3
20220712-NEG-427-40-7D.raw
WWL
tissue-T3
20220712-NEG-428-40-7D.raw
WWL
tissue-T3
20220712-NEG-429-40-7D.raw
WWL
tissue-T3
20220712-NEG-432-40-7D.raw
WWL
tissue-T3
20220712-NEG-433-C-7D.raw
WWL
tissue-T3
20220712-NEG-435-C-7D.raw
WWL
tissue-T3
20220712-NEG-442-25-7D.raw
WWL
tissue-T3
20220712-NEG-444-25-7D.raw
WWL
tissue-T3
20220712-NEG-448-C-7D.raw
WWL
tissue-T3
20220712-NEG-451-25-7D.raw
WWL
tissue-T3
20220712-NEG-453-C-7D.raw
WWL
tissue-T3
20220712-NEG-467-40-7D.raw
WWL
tissue-T3
20220712-NEG-472-C-7D.raw
WWL
tissue-T3
20220712-NEG-475-25-7D.raw
WWL
tissue-T3
20220712-NEG-477-25-7D.raw
WWL
tissue-T3
20220712-NEG-478-C-7D.raw
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 336 rows!
Extracted information for 336 samples.
Processing  ST001404
No raw data detected. Ignoring ST001404
Processing  ST000013
No raw data detected. Ignoring ST000013
Processing  ST000982
No raw data detected. Ignoring ST000982
Processing  ST002368
Initiating REDU-table generation for AN003863
Rest length is 18
raw file key found.
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
  : missing value
Pilsner HHEAR Pilot-LCMS-Untargeted
NIST_1_1.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
NIST_1_2.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
NIST_2_1.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
NIST_2_2.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
SP_1_1.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
SP_1_2.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
SP_2_1.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
SP_2_2.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
S_1.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
S_10.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
S_2.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
S_3.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
S_4.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
S_5.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
S_6.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
S_7.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
S_8.raw
Pilsner HHEAR Pilot-LCMS-Untargeted
S_9.raw
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 18 rows!
Extracted information for 18 samples.
Processing  ST001108
No raw data detected. Ignoring ST001108
Processing  ST002272
Initiating REDU-table generation for AN003714
Rest length is 18
raw file key found.
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
  : missing value
barley2015
IJPB_15102107.CDF
barley2015
IJPB_15102108.CDF
barley2015
IJPB_15102109.CDF
barley2015
IJPB_15102110.CDF
barley2015
IJPB_15102111.CDF
barley2015
IJPB_15102112.CDF
barley2015
IJPB_15102113.CDF
barley2015
IJPB_15102114.CDF
barley2015
IJPB_15102115.CDF
barley2015
IJPB_15102117.CDF
barley2015
IJPB_15102118.CDF
barley2015
IJPB_15102119.CDF
barley2015
IJPB_15102120.CDF
barley2015
IJPB_15102121.CDF
barley2015
IJPB_15102122.CDF
barley2015
IJPB_15102123.CDF
barley2015
IJPB_15102124.CDF
barley2015
IJPB_15102125.CDF
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 18 rows!
Extracted information for 18 samples.
Processing  ST001614
No raw data detected. Ignoring ST001614
Processing  ST001973
No raw data detected. Ignoring ST001973
Processing  ST002956
Initiating REDU-table generation for AN004853
Rest length is 90
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..

Mapping potential matches:   0%|          | 0/90 [00:00<?, ?it/s][A
Mapping potential matches:   7%|▋         | 6/90 [00:00<00:01, 52.35it/s][A
Mapping potential matches:  13%|█▎        | 12/90 [00:00<00:01, 52.50it/s][A
Mapping potential matches:  20%|██        | 18/90 [00:00<00:01, 48.96it/s][A
Mapping potential matches:  26%|██▌       | 23/90 [00:00<00:01, 44.51it/s][A
Mapping potential matches:  31%|███       | 28/90 [00:00<00:01, 42.52it/s][A
Mapping potential matches:  37%|███▋      | 33/90 [00:00<00:01, 43.81it/s][A
Mapping potential matches:  43%|████▎     | 39/90 [00:00<00:01, 46.99it/s][A
Mapping potential matches:  50%|█████     | 45/90 [00:00<00:00, 49.13it/s][A
Mapping potential matches:  57%|█████▋    | 51/90 [00:01<00:00, 50.49it/s][A
Mapping potential matches:  63%|██████▎   | 57/90 [00:01<00:00, 51.26it/s][A
Mapping potential matches:  70%|███████   | 63/90 [00:01<00:00, 52.10it/s][A
Mapping potential matches:  77%|███████▋  | 69/90 [00:01<00:00, 52.63it/s][A
Mapping potential matches:  83%|████████▎ | 75/90 [00:01<00:00, 52.93it/s][A
Mapping potential matches:  90%|█████████ | 81/90 [00:01<00:00, 53.06it/s][A
Mapping potential matches:  97%|█████████▋| 87/90 [00:01<00:00, 53.36it/s][AMapping potential matches: 100%|██████████| 90/90 [00:01<00:00, 50.33it/s]
analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
Initiating REDU-table generation for AN004854
Rest length is 90
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..

Mapping potential matches:   0%|          | 0/90 [00:00<?, ?it/s][A
Mapping potential matches:   7%|▋         | 6/90 [00:00<00:01, 53.47it/s][A
Mapping potential matches:  13%|█▎        | 12/90 [00:00<00:01, 53.46it/s][A
Mapping potential matches:  20%|██        | 18/90 [00:00<00:01, 53.75it/s][A
Mapping potential matches:  27%|██▋       | 24/90 [00:00<00:01, 53.95it/s][A
Mapping potential matches:  33%|███▎      | 30/90 [00:00<00:01, 54.20it/s][A
Mapping potential matches:  40%|████      | 36/90 [00:00<00:00, 54.23it/s][A
Mapping potential matches:  47%|████▋     | 42/90 [00:00<00:00, 53.25it/s][A
Mapping potential matches:  53%|█████▎    | 48/90 [00:00<00:00, 53.55it/s][A
Mapping potential matches:  60%|██████    | 54/90 [00:01<00:00, 53.73it/s][A
Mapping potential matches:  67%|██████▋   | 60/90 [00:01<00:00, 53.81it/s][A
Mapping potential matches:  73%|███████▎  | 66/90 [00:01<00:00, 53.77it/s][A
Mapping potential matches:  80%|████████  | 72/90 [00:01<00:00, 53.93it/s][A
Mapping potential matches:  87%|████████▋ | 78/90 [00:01<00:00, 53.93it/s][A
Mapping potential matches:  93%|█████████▎| 84/90 [00:01<00:00, 54.00it/s][A
Mapping potential matches: 100%|██████████| 90/90 [00:01<00:00, 53.95it/s][AMapping potential matches: 100%|██████████| 90/90 [00:01<00:00, 53.83it/s]
analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
Initiating REDU-table generation for AN004855
Rest length is 90
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..

Mapping potential matches:   0%|          | 0/90 [00:00<?, ?it/s][A
Mapping potential matches:   7%|▋         | 6/90 [00:00<00:01, 51.79it/s][A
Mapping potential matches:  13%|█▎        | 12/90 [00:00<00:01, 51.82it/s][A
Mapping potential matches:  20%|██        | 18/90 [00:00<00:01, 51.58it/s][A
Mapping potential matches:  27%|██▋       | 24/90 [00:00<00:01, 52.45it/s][A
Mapping potential matches:  33%|███▎      | 30/90 [00:00<00:01, 52.93it/s][A
Mapping potential matches:  40%|████      | 36/90 [00:00<00:01, 53.23it/s][A
Mapping potential matches:  47%|████▋     | 42/90 [00:00<00:00, 53.71it/s][A
Mapping potential matches:  53%|█████▎    | 48/90 [00:00<00:00, 53.70it/s][A
Mapping potential matches:  60%|██████    | 54/90 [00:01<00:00, 54.00it/s][A
Mapping potential matches:  67%|██████▋   | 60/90 [00:01<00:00, 53.87it/s][A
Mapping potential matches:  73%|███████▎  | 66/90 [00:01<00:00, 54.11it/s][A
Mapping potential matches:  80%|████████  | 72/90 [00:01<00:00, 53.99it/s][A
Mapping potential matches:  87%|████████▋ | 78/90 [00:01<00:00, 54.07it/s][A
Mapping potential matches:  93%|█████████▎| 84/90 [00:01<00:00, 53.92it/s][A
Mapping potential matches: 100%|██████████| 90/90 [00:01<00:00, 54.00it/s][AMapping potential matches: 100%|██████████| 90/90 [00:01<00:00, 53.53it/s]

analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
Initiating REDU-table generation for AN004856
Rest length is 90
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..
Mapping potential matches:   0%|          | 0/90 [00:00<?, ?it/s][A
Mapping potential matches:   7%|▋         | 6/90 [00:00<00:01, 53.66it/s][A
Mapping potential matches:  13%|█▎        | 12/90 [00:00<00:01, 53.15it/s][A
Mapping potential matches:  20%|██        | 18/90 [00:00<00:01, 53.45it/s][A
Mapping potential matches:  27%|██▋       | 24/90 [00:00<00:01, 53.39it/s][A
Mapping potential matches:  33%|███▎      | 30/90 [00:00<00:01, 53.68it/s][A
Mapping potential matches:  40%|████      | 36/90 [00:00<00:01, 53.43it/s][A
Mapping potential matches:  47%|████▋     | 42/90 [00:00<00:00, 53.35it/s][A
Mapping potential matches:  53%|█████▎    | 48/90 [00:00<00:00, 53.54it/s][A
Mapping potential matches:  60%|██████    | 54/90 [00:01<00:00, 53.68it/s][A
Mapping potential matches:  67%|██████▋   | 60/90 [00:01<00:00, 53.69it/s][A
Mapping potential matches:  73%|███████▎  | 66/90 [00:01<00:00, 53.49it/s][A
Mapping potential matches:  80%|████████  | 72/90 [00:01<00:00, 53.76it/s][A
Mapping potential matches:  87%|████████▋ | 78/90 [00:01<00:00, 53.69it/s][A
Mapping potential matches:  93%|█████████▎| 84/90 [00:01<00:00, 53.54it/s][A
Mapping potential matches: 100%|██████████| 90/90 [00:01<00:00, 53.73it/s][AMapping potential matches: 100%|██████████| 90/90 [00:01<00:00, 53.58it/s]analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
  : missing value
X0141-M001A-05_3C9.mzML
X0141-M001A-06_1A4.mzML
X0141-M001A-07_2A1.mzML
X0141-M001A-08_3A10.mzML
X0141-M001A-09_1C2.mzML
X0141-M001A-100_1A7.mzML
X0141-M001A-101_2C2.mzML
X0141-M001A-102_1A10.mzML
X0141-M001A-103_1C8.mzML
X0141-M001A-104_2B6.mzML
X0141-M001A-105_3B4.mzML
X0141-M001A-106_3C1.mzML
X0141-M001A-107_2C3.mzML
X0141-M001A-108_2B7.mzML
X0141-M001A-109_3B3.mzML
X0141-M001A-10_1B9.mzML
X0141-M001A-110_3B6.mzML
X0141-M001A-111_2B5.mzML
X0141-M001A-112_2B1.mzML
X0141-M001A-113_3B1.mzML
X0141-M001A-114_1A8.mzML
X0141-M001A-11_1A5.mzML
X0141-M001A-12_3A1.mzML
X0141-M001A-13_1B8.mzML
X0141-M001A-14_3A2.mzML
X0141-M001A-15_2B2.mzML
X0141-M001A-16_1A9.mzML
X0141-M001A-17_1B2.mzML
X0141-M001A-18_1C4.mzML
X0141-M001A-19_2B9.mzML
X0141-M001A-24_3C7.mzML
X0141-M001A-25_3B10.mzML
X0141-M001A-26_1C10.mzML
X0141-M001A-27_2C8.mzML
X0141-M001A-28_3A6.mzML
X0141-M001A-29_2A10.mzML
X0141-M001A-30_3C2.mzML
X0141-M001A-31_3A5.mzML
X0141-M001A-32_2B4.mzML
X0141-M001A-33_3B8.mzML
X0141-M001A-34_3C8.mzML
X0141-M001A-35_1C7.mzML
X0141-M001A-36_3A9.mzML
X0141-M001A-37_1A2.mzML
X0141-M001A-38_3B5.mzML
X0141-M001A-43_2C5.mzML
X0141-M001A-44_2A3.mzML
X0141-M001A-45_1B10.mzML
X0141-M001A-46_2B3.mzML
X0141-M001A-47_3B9.mzML
X0141-M001A-48_1A1.mzML
X0141-M001A-49_1B3.mzML
X0141-M001A-50_1A6.mzML
X0141-M001A-51_3A7.mzML
X0141-M001A-52_2C7.mzML
X0141-M001A-53_1B1.mzML
X0141-M001A-54_3A3.mzML
X0141-M001A-55_2A5.mzML
X0141-M001A-56_1C6.mzML
X0141-M001A-57_1C9.mzML
X0141-M001A-62_3B2.mzML
X0141-M001A-63_2B10.mzML
X0141-M001A-64_3C3.mzML
X0141-M001A-65_2A6.mzML
X0141-M001A-66_2C1.mzML
X0141-M001A-67_1B4.mzML
X0141-M001A-68_1C1.mzML
X0141-M001A-69_3C5.mzML
X0141-M001A-70_1B6.mzML
X0141-M001A-71_2A7.mzML
X0141-M001A-72_1C3.mzML
X0141-M001A-73_2A9.mzML
X0141-M001A-74_3A4.mzML
X0141-M001A-75_2A4.mzML
X0141-M001A-76_1C5.mzML
X0141-M001A-81_2A2.mzML
X0141-M001A-81_2A2_20200119144959.mzML
X0141-M001A-82_3C4.mzML
X0141-M001A-82_3C4_20200119151648.mzML
X0141-M001A-83_2C4.mzML
X0141-M001A-83_2C4_20200119154336.mzML
X0141-M001A-84_1B5.mzML
X0141-M001A-84_1B5_20200119161024.mzML
X0141-M001A-85_3A8.mzML
X0141-M001A-86_2A8.mzML
X0141-M001A-87_1B7.mzML
X0141-M001A-88_3B7.mzML
X0141-M001A-89_3C10.mzML
X0141-M001A-90_2C10.mzML
X0141-M001A-91_3C6.mzML
X0141-M001A-92_2B8.mzML
X0141-M001A-93_2C6.mzML
X0141-M001A-94_2C9.mzML
X0141-M001A-95_1A3.mzML
X0141-M002A-05_3C9.mzML
X0141-M002A-06_1A4.mzML
X0141-M002A-07_2A1.mzML
X0141-M002A-08_3A10.mzML
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X0141-M002A-103_1C8.mzML
X0141-M002A-104_2B6.mzML
X0141-M002A-105_3B4.mzML
X0141-M002A-106_3C1.mzML
X0141-M002A-107_2C3.mzML
X0141-M002A-108_2B7.mzML
X0141-M002A-109_3B3.mzML
X0141-M002A-10_1B9.mzML
X0141-M002A-110_3B6.mzML
X0141-M002A-111_2B5.mzML
X0141-M002A-112_2B1.mzML
X0141-M002A-113_3B1.mzML
X0141-M002A-114_1A8.mzML
X0141-M002A-11_1A5.mzML
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X0141-M002A-56_1C6.mzML
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X0141-M002A-62_3B2.mzML
X0141-M002A-63_2B10.mzML
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X0141-M002A-66_2C1.mzML
X0141-M002A-67_1B4.mzML
X0141-M002A-68_1C1.mzML
X0141-M002A-69_3C5.mzML
X0141-M002A-70_1B6.mzML
X0141-M002A-71_2A7.mzML
X0141-M002A-72_1C3.mzML
X0141-M002A-73_2A9.mzML
X0141-M002A-74_3A4.mzML
X0141-M002A-75_2A4.mzML
X0141-M002A-76_1C5.mzML
X0141-M002A-81_2A2.mzML
X0141-M002A-82_3C4.mzML
X0141-M002A-83_2C4.mzML
X0141-M002A-84_1B5.mzML
X0141-M002A-85_3A8.mzML
X0141-M002A-86_2A8.mzML
X0141-M002A-87_1B7.mzML
X0141-M002A-88_3B7.mzML
X0141-M002A-89_3C10.mzML
X0141-M002A-90_2C10.mzML
X0141-M002A-91_3C6.mzML
X0141-M002A-92_2B8.mzML
X0141-M002A-93_2C6.mzML
X0141-M002A-94_2C9.mzML
X0141-M002A-95_1A3.mzML
X0141-M004A-05_3C9.mzML
X0141-M004A-06_1A4.mzML
X0141-M004A-07_2A1.mzML
X0141-M004A-08_3A10.mzML
X0141-M004A-09_1C2.mzML
X0141-M004A-100_1A7.mzML
X0141-M004A-101_2C2.mzML
X0141-M004A-102_1A10.mzML
X0141-M004A-103_1C8.mzML
X0141-M004A-104_2B6.mzML
X0141-M004A-106_3C1.mzML
X0141-M004A-107_2C3.mzML
X0141-M004A-108_2B7.mzML
X0141-M004A-109_3B3.mzML
X0141-M004A-10_1B9.mzML
X0141-M004A-110_3B6.mzML
X0141-M004A-111_2B5.mzML
X0141-M004A-112_2B1.mzML
X0141-M004A-113_3B1.mzML
X0141-M004A-114_1A8.mzML
X0141-M004A-11_1A5.mzML
X0141-M004A-12_3A1.mzML
X0141-M004A-13_1B8.mzML
X0141-M004A-14_3A2.mzML
X0141-M004A-15_2B2.mzML
X0141-M004A-16_1A9.mzML
X0141-M004A-17_1B2.mzML
X0141-M004A-18_1C4.mzML
X0141-M004A-19_2B9.mzML
X0141-M004A-24_3C7.mzML
X0141-M004A-25_3B10.mzML
X0141-M004A-26_1C10.mzML
X0141-M004A-27_2C8.mzML
X0141-M004A-28_3A6.mzML
X0141-M004A-29_2A10.mzML
X0141-M004A-30_3C2.mzML
X0141-M004A-31_3A5.mzML
X0141-M004A-32_2B4.mzML
X0141-M004A-33_3B8.mzML
X0141-M004A-34_3C8.mzML
X0141-M004A-35_1C7.mzML
X0141-M004A-36_3A9.mzML
X0141-M004A-37_1A2.mzML
X0141-M004A-38_3B5.mzML
X0141-M004A-43_2C5.mzML
X0141-M004A-44_2A3.mzML
X0141-M004A-45_1B10.mzML
X0141-M004A-46_2B3.mzML
X0141-M004A-47_3B9.mzML
X0141-M004A-48_1A1.mzML
X0141-M004A-49_1B3.mzML
X0141-M004A-50_1A6.mzML
X0141-M004A-51_3A7.mzML
X0141-M004A-52_2C7.mzML
X0141-M004A-53_1B1.mzML
X0141-M004A-54_3A3.mzML
X0141-M004A-56_1C6.mzML
X0141-M004A-57_1C9.mzML
X0141-M004A-62_3B2.mzML
X0141-M004A-63_2B10.mzML
X0141-M004A-64_3C3_200131142132.mzML
X0141-M004A-65_2A6_200131152955.mzML
X0141-M004A-66_2C1_200131163753.mzML
X0141-M004A-67_1B4.mzML
X0141-M004A-68_1C1.mzML
X0141-M004A-69_3C5.mzML
X0141-M004A-70_1B6.mzML
X0141-M004A-71_2A7.mzML
X0141-M004A-72_1C3.mzML
X0141-M004A-73_2A9.mzML
X0141-M004A-74_3A4.mzML
X0141-M004A-75_2A4.mzML
X0141-M004A-76_1C5.mzML
X0141-M004A-81_2A2.mzML
X0141-M004A-82_3C4.mzML
X0141-M004A-84_1B5.mzML
X0141-M004A-85_3A8.mzML
X0141-M004A-86_2A8.mzML
X0141-M004A-87_1B7.mzML
X0141-M004A-88_3B7.mzML
X0141-M004A-89_3C10.mzML
X0141-M004A-90_2C10.mzML
X0141-M004A-91_3C6.mzML
X0141-M004A-92_2B8.mzML
X0141-M004A-93_2C6.mzML
X0141-M004A-94_2C9.mzML
X0141-M004A-95_1A3.mzML
X0141-M005A-05_3C9.mzML
X0141-M005A-06_1A4.mzML
X0141-M005A-07_2A1.mzML
X0141-M005A-08_3A10.mzML
X0141-M005A-09_1C2_200123190509.mzML
X0141-M005A-100_1A7.mzML
X0141-M005A-101_2C2.mzML
X0141-M005A-102_1A10.mzML
X0141-M005A-103_1C8.mzML
X0141-M005A-104_2B6.mzML
X0141-M005A-105_3B4.mzML
X0141-M005A-106_3C1.mzML
X0141-M005A-107_2C3.mzML
X0141-M005A-108_2B7.mzML
X0141-M005A-109_3B3.mzML
X0141-M005A-10_1B9.mzML
X0141-M005A-110_3B6.mzML
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X0141-M005A-112_2B1.mzML
X0141-M005A-113_3B1.mzML
X0141-M005A-114_1A8.mzML
X0141-M005A-11_1A5.mzML
X0141-M005A-12_3A1.mzML
X0141-M005A-13_1B8.mzML
X0141-M005A-14_3A2.mzML
X0141-M005A-15_2B2.mzML
X0141-M005A-16_1A9.mzML
X0141-M005A-17_1B2.mzML
X0141-M005A-18_1C4.mzML
X0141-M005A-19_2B9.mzML
X0141-M005A-24_3C7.mzML
X0141-M005A-25_3B10.mzML
X0141-M005A-26_1C10.mzML
X0141-M005A-27_2C8.mzML
X0141-M005A-28_3A6.mzML
X0141-M005A-29_2A10.mzML
X0141-M005A-30_3C2.mzML
X0141-M005A-31_3A5.mzML
X0141-M005A-32_2B4.mzML
X0141-M005A-33_3B8.mzML
X0141-M005A-34_3C8.mzML
X0141-M005A-35_1C7.mzML
X0141-M005A-36_3A9.mzML
X0141-M005A-37_1A2.mzML
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X0141-M005A-43_2C5.mzML
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X0141-M005A-45_1B10.mzML
X0141-M005A-46_2B3.mzML
X0141-M005A-47_3B9.mzML
X0141-M005A-48_1A1.mzML
X0141-M005A-49_1B3.mzML
X0141-M005A-50_1A6.mzML
X0141-M005A-51_3A7.mzML
/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  0%|          | 11/3128 [00:56<3:42:44,  4.29s/it]/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  0%|          | 12/3128 [00:59<3:39:31,  4.23s/it]
X0141-M005A-52_2C7.mzML
X0141-M005A-53_1B1.mzML
X0141-M005A-54_3A3.mzML
X0141-M005A-55_2A5.mzML
X0141-M005A-56_1C6.mzML
X0141-M005A-57_1C9.mzML
X0141-M005A-62_3B2.mzML
X0141-M005A-63_2B10.mzML
X0141-M005A-64_3C3.mzML
X0141-M005A-65_2A6.mzML
X0141-M005A-66_2C1.mzML
X0141-M005A-67_1B4.mzML
X0141-M005A-68_1C1.mzML
X0141-M005A-69_3C5.mzML
X0141-M005A-70_1B6.mzML
X0141-M005A-71_2A7.mzML
X0141-M005A-72_1C3.mzML
X0141-M005A-73_2A9.mzML
X0141-M005A-74_3A4.mzML
X0141-M005A-75_2A4.mzML
X0141-M005A-76_1C5.mzML
X0141-M005A-81_2A2.mzML
X0141-M005A-82_3C4.mzML
X0141-M005A-83_2C4.mzML
X0141-M005A-84_1B5.mzML
X0141-M005A-85_3A8.mzML
X0141-M005A-86_2A8.mzML
X0141-M005A-87_1B7.mzML
X0141-M005A-88_3B7.mzML
X0141-M005A-89_3C10.mzML
X0141-M005A-90_2C10.mzML
X0141-M005A-91_3C6.mzML
X0141-M005A-92_2B8.mzML
X0141-M005A-93_2C6.mzML
X0141-M005A-94_2C9.mzML
X0141-M005A-95_1A3.mzML
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 361 rows!
Extracted information for 361 samples.
Processing  ST003410
Initiating REDU-table generation for AN005599
Rest length is 32
raw file key found.
Initiating REDU-table generation for AN005600
Rest length is 32
raw file key found.
Initiating REDU-table generation for AN005601
Rest length is 32
raw file key found.
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
  : missing value
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-01.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-02.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-03.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-04.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-05.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-06.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-07.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-08.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-09.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-10.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-11.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-12.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-13.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-14.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-15.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-16.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-17.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-18.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-19.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-20.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-21.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-22.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-23.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-24.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-25.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-26.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-27.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-28.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-29.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-30.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-31.mzML
OBJ0042816_Giredestrant_Palci_raw_mzml
Lipidomics - 20240129 - 1-32.mzML
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 32 rows!
Extracted information for 32 samples.
Processing  ST002921
Initiating REDU-table generation for AN004791
Rest length is 418
raw file key found.
found filename_raw to filename_base match
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
  : missing value
NTM_Data
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P-Sr-B-F-055.raw
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P-Sr-B-F-056.raw
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P-Sr-B-F-058.raw
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P-Sr-B-F-059.raw
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P-Sr-B-F-068.raw
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P-Sr-B-F-070.raw
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P-Sr-B-F-073.raw
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P-Sr-B-F-075.raw
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P-Sr-B-F-076.raw
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P-Sr-B-F-079.raw
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P-Sr-B-F-080.raw
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P-Sr-B-F-081.raw
NTM_Data
P-Sr-B-F-083.raw
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P-Sr-B-F-085.raw
NTM_Data
P-Sr-B-F-087.raw
NTM_Data
P-Sr-B-F-088.raw
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P-Sr-B-F-089.raw
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P-Sr-B-F-091.raw
NTM_Data
P-Sr-B-F-093.raw
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P-Sr-B-F-094.raw
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P-Sr-B-F-095.raw
NTM_Data
P-Sr-B-F-097.raw
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P-Sr-B-F-098.raw
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P-Sr-B-F-099.raw
NTM_Data
P-Sr-B-M-051.raw
NTM_Data
P-Sr-B-M-054.raw
NTM_Data
P-Sr-B-M-061.raw
NTM_Data
P-Sr-B-M-064.raw
NTM_Data
P-Sr-B-M-065.raw
NTM_Data
P-Sr-B-M-067.raw
NTM_Data
P-Sr-B-M-069.raw
NTM_Data
P-Sr-B-M-071.raw
NTM_Data
P-Sr-B-M-072.raw
NTM_Data
P-Sr-B-M-074.raw
NTM_Data
P-Sr-B-M-077.raw
NTM_Data
P-Sr-B-M-078.raw
NTM_Data
P-Sr-B-M-082.raw
NTM_Data
P-Sr-B-M-084.raw
NTM_Data
P-Sr-B-M-086.raw
NTM_Data
P-Sr-B-M-090.raw
NTM_Data
P-Sr-B-M-092.raw
NTM_Data
P-Sr-B-M-096.raw
NTM_Data
P-Sr-B-M-100.raw
NTM_Data
P-Sr-C-F-103.raw
NTM_Data
P-Sr-C-F-104.raw
NTM_Data
P-Sr-C-F-105.raw
NTM_Data
P-Sr-C-F-106.raw
NTM_Data
P-Sr-C-F-107.raw
NTM_Data
P-Sr-C-F-108.raw
NTM_Data
P-Sr-C-F-109.raw
NTM_Data
P-Sr-C-F-110.raw
NTM_Data
P-Sr-C-F-112.raw
NTM_Data
P-Sr-C-F-114.raw
NTM_Data
P-Sr-C-F-115.raw
NTM_Data
P-Sr-C-F-118.raw
NTM_Data
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P-Sr-T-M-036.raw/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
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IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 418 rows!
Extracted information for 418 samples.
Processing  ST001158
No raw data detected. Ignoring ST001158
Processing  ST001195
Initiating REDU-table generation for AN001991
Rest length is 80
no raw file key found.
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..

Mapping potential matches:   0%|          | 0/80 [00:00<?, ?it/s][A
Mapping potential matches:  32%|███▎      | 26/80 [00:00<00:00, 256.11it/s][A
Mapping potential matches:  69%|██████▉   | 55/80 [00:00<00:00, 271.32it/s][AMapping potential matches: 100%|██████████| 80/80 [00:00<00:00, 274.72it/s]
  0%|          | 15/3128 [01:06<2:35:14,  2.99s/it]analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
An error occurred in MWB_to_REDU_wrapper: No raw data could be associated with metadata. Stopping!
Traceback:
Traceback (most recent call last):
  File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/MWB_to_REDU.py", line 991, in MWB_to_REDU_wrapper
    df_outer_dict = create_dataframe_outer_dict(mwTab_json, rest_response, raw_file_name_df=raw_file_name_df, path_to_csvs=path_to_csvs, allowedTerm_dict=allowedTerm_dict, ontology_table=ontology_table)
  File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/MWB_to_REDU.py", line 681, in create_dataframe_outer_dict
    df_inner_SUBJECT_SAMPLE_FACTORS = create_dataframe_from_SUBJECT_SAMPLE_FACTORS(
  File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/MWB_to_REDU.py", line 537, in create_dataframe_from_SUBJECT_SAMPLE_FACTORS
    raise ValueError("No raw data could be associated with metadata. Stopping!")
ValueError: No raw data could be associated with metadata. Stopping!

Processing  ST002180
Initiating REDU-table generation for AN003570
Rest length is 335
raw file key found.
Initiating REDU-table generation for AN003571
Rest length is 335
raw file key found.
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
  : missing value
DT3132_Data
Method_1_DMS
1.mzML
DT3132_Data
Method_1_DMS
100.mzML
DT3132_Data
Method_1_DMS
101.mzML
DT3132_Data
Method_1_DMS
102.mzML
DT3132_Data
Method_1_DMS
103.mzML
DT3132_Data
Method_1_DMS
104.mzML
DT3132_Data
Method_1_DMS
105.mzML
DT3132_Data
Method_1_DMS
106.mzML
DT3132_Data
Method_1_DMS
107.mzML
DT3132_Data
Method_1_DMS
108.mzML
DT3132_Data
Method_1_DMS
109.mzML
DT3132_Data
Method_1_DMS
11.mzML
DT3132_Data
Method_1_DMS
110.mzML
DT3132_Data
Method_1_DMS
111.mzML
DT3132_Data
Method_1_DMS
112.mzML
DT3132_Data
Method_1_DMS
113.mzML
DT3132_Data
Method_1_DMS
114.mzML
DT3132_Data
Method_1_DMS
115.mzML
DT3132_Data
Method_1_DMS
116.mzML
DT3132_Data
Method_1_DMS
117.mzML
DT3132_Data
Method_1_DMS
118.mzML
DT3132_Data
Method_1_DMS
119.mzML
DT3132_Data
Method_1_DMS
12.mzML
DT3132_Data
Method_1_DMS
120.mzML
DT3132_Data
Method_1_DMS
122.mzML
DT3132_Data
Method_1_DMS
124.mzML
DT3132_Data
Method_1_DMS
126.mzML
DT3132_Data
Method_1_DMS
127.mzML
DT3132_Data
Method_1_DMS
128.mzML
DT3132_Data
Method_1_DMS
129.mzML
DT3132_Data
Method_1_DMS
130.mzML
DT3132_Data
Method_1_DMS
131.mzML
DT3132_Data
Method_1_DMS
132.mzML
DT3132_Data
Method_1_DMS
133.mzML
DT3132_Data
Method_1_DMS
134.mzML
DT3132_Data
Method_1_DMS
135.mzML
DT3132_Data
Method_1_DMS
136.mzML
DT3132_Data
Method_1_DMS
137.mzML
DT3132_Data
Method_1_DMS
138.mzML
DT3132_Data
Method_1_DMS
139.mzML
DT3132_Data
Method_1_DMS
14.mzML
DT3132_Data
Method_1_DMS
140.mzML
DT3132_Data
Method_1_DMS
141.mzML
DT3132_Data
Method_1_DMS
142.mzML
DT3132_Data
Method_1_DMS
143.mzML
DT3132_Data
Method_1_DMS
144.mzML
DT3132_Data
Method_1_DMS
145.mzML
DT3132_Data
Method_1_DMS
146.mzML
DT3132_Data
Method_1_DMS
147.mzML
DT3132_Data
Method_1_DMS
148.mzML
DT3132_Data
Method_1_DMS
149.mzML
DT3132_Data
Method_1_DMS
15.mzML
DT3132_Data
Method_1_DMS
150.mzML
DT3132_Data
Method_1_DMS
151.mzML
DT3132_Data
Method_1_DMS
152.mzML
DT3132_Data
Method_1_DMS
153.mzML
DT3132_Data
Method_1_DMS
154.mzML
DT3132_Data
Method_1_DMS
155.mzML
DT3132_Data
Method_1_DMS
156.mzML
DT3132_Data
Method_1_DMS
157.mzML
DT3132_Data
Method_1_DMS
158.mzML
DT3132_Data
Method_1_DMS
159.mzML
DT3132_Data
Method_1_DMS
16.mzML
DT3132_Data
Method_1_DMS
161.mzML
DT3132_Data
Method_1_DMS
163.mzML
DT3132_Data
Method_1_DMS
164.mzML
DT3132_Data
Method_1_DMS
165.mzML
DT3132_Data
Method_1_DMS
166.mzML
DT3132_Data
Method_1_DMS
167.mzML
DT3132_Data
Method_1_DMS
168.mzML
DT3132_Data
Method_1_DMS
169.mzML
DT3132_Data
Method_1_DMS
17.mzML
DT3132_Data
Method_1_DMS
170.mzML
DT3132_Data
Method_1_DMS
171.mzML
DT3132_Data
Method_1_DMS
172.mzML
DT3132_Data
Method_1_DMS
173.mzML
DT3132_Data
Method_1_DMS
174.mzML
DT3132_Data
Method_1_DMS
175.mzML
DT3132_Data
Method_1_DMS
176.mzML
DT3132_Data
Method_1_DMS
177.mzML
DT3132_Data
Method_1_DMS
178.mzML
DT3132_Data
Method_1_DMS
179.mzML
DT3132_Data
Method_1_DMS
18.mzML
DT3132_Data
Method_1_DMS
180.mzML
DT3132_Data
Method_1_DMS
181.mzML
DT3132_Data
Method_1_DMS
182.mzML
DT3132_Data
Method_1_DMS
183.mzML
DT3132_Data
Method_1_DMS
184.mzML
DT3132_Data
Method_1_DMS
185.mzML
DT3132_Data
Method_1_DMS
186.mzML
DT3132_Data
Method_1_DMS
188.mzML
DT3132_Data
Method_1_DMS
189.mzML
DT3132_Data
Method_1_DMS
19.mzML
DT3132_Data
Method_1_DMS
190.mzML
DT3132_Data
Method_1_DMS
191.mzML
DT3132_Data
Method_1_DMS
192.mzML
DT3132_Data
Method_1_DMS
193.mzML
DT3132_Data
Method_1_DMS
194.mzML
DT3132_Data
Method_1_DMS
195.mzML
DT3132_Data
Method_1_DMS
197.mzML
DT3132_Data
Method_1_DMS
198.mzML
DT3132_Data
Method_1_DMS
199.mzML
DT3132_Data
Method_1_DMS
2.mzML
DT3132_Data
Method_1_DMS
20.mzML
DT3132_Data
Method_1_DMS
201.mzML
DT3132_Data
Method_1_DMS
203.mzML
DT3132_Data
Method_1_DMS
204.mzML
DT3132_Data
Method_1_DMS
205.mzML
DT3132_Data
Method_1_DMS
206.mzML
DT3132_Data
Method_1_DMS
207.mzML
DT3132_Data
Method_1_DMS
208.mzML
DT3132_Data
Method_1_DMS
209.mzML
DT3132_Data
Method_1_DMS
21.mzML
DT3132_Data
Method_1_DMS
210.mzML
DT3132_Data
Method_1_DMS
211.mzML
DT3132_Data
Method_1_DMS
213.mzML
DT3132_Data
Method_1_DMS
214.mzML
DT3132_Data
Method_1_DMS
215.mzML
DT3132_Data
Method_1_DMS
216.mzML
DT3132_Data
Method_1_DMS
217.mzML
DT3132_Data
Method_1_DMS
218.mzML
DT3132_Data
Method_1_DMS
219.mzML
DT3132_Data
Method_1_DMS
22.mzML
DT3132_Data
Method_1_DMS
220.mzML
DT3132_Data
Method_1_DMS
221.mzML
DT3132_Data
Method_1_DMS
222.mzML
DT3132_Data
Method_1_DMS
223.mzML
DT3132_Data
Method_1_DMS
224.mzML
DT3132_Data
Method_1_DMS
225.mzML
DT3132_Data
Method_1_DMS
226.mzML
DT3132_Data
Method_1_DMS
227.mzML
DT3132_Data
Method_1_DMS
228.mzML
DT3132_Data
Method_1_DMS
229.mzML
DT3132_Data
Method_1_DMS
23.mzML
DT3132_Data
Method_1_DMS
230.mzML
DT3132_Data
Method_1_DMS
231.mzML
DT3132_Data
Method_1_DMS
232.mzML
DT3132_Data
Method_1_DMS
233.mzML
DT3132_Data
Method_1_DMS
234.mzML
DT3132_Data
Method_1_DMS
235.mzML
DT3132_Data
Method_1_DMS
237.mzML
DT3132_Data
Method_1_DMS
238.mzML
DT3132_Data
Method_1_DMS
239.mzML
DT3132_Data
Method_1_DMS
24.mzML
DT3132_Data
Method_1_DMS
240.mzML
DT3132_Data
Method_1_DMS
242.mzML
DT3132_Data
Method_1_DMS
243.mzML
DT3132_Data
Method_1_DMS
244.mzML
DT3132_Data
Method_1_DMS
245.mzML
DT3132_Data
Method_1_DMS
246.mzML
DT3132_Data
Method_1_DMS
248.mzML
DT3132_Data
Method_1_DMS
249.mzML
DT3132_Data
Method_1_DMS
25.mzML
DT3132_Data
Method_1_DMS
250.mzML
DT3132_Data
Method_1_DMS
251.mzML
DT3132_Data
Method_1_DMS
252.mzML
DT3132_Data
Method_1_DMS
253.mzML
DT3132_Data
Method_1_DMS
254.mzML
DT3132_Data
Method_1_DMS
255.mzML
DT3132_Data
Method_1_DMS
256.mzML
DT3132_Data
Method_1_DMS
257.mzML
DT3132_Data
Method_1_DMS
258.mzML
DT3132_Data
Method_1_DMS
259.mzML
DT3132_Data
Method_1_DMS
26.mzML
DT3132_Data
Method_1_DMS
260.mzML
DT3132_Data
Method_1_DMS
261.mzML
DT3132_Data
Method_1_DMS
262.mzML
DT3132_Data
Method_1_DMS
263.mzML
DT3132_Data
Method_1_DMS
264.mzML
DT3132_Data
Method_1_DMS
265.mzML
DT3132_Data
Method_1_DMS
266.mzML
DT3132_Data
Method_1_DMS
267.mzML
DT3132_Data
Method_1_DMS
268.mzML
DT3132_Data
Method_1_DMS
269.mzML
DT3132_Data
Method_1_DMS
27.mzML
DT3132_Data
Method_1_DMS
270.mzML
DT3132_Data
Method_1_DMS
271.mzML
DT3132_Data
Method_1_DMS
272.mzML
DT3132_Data
Method_1_DMS
273.mzML
DT3132_Data
Method_1_DMS
274.mzML
DT3132_Data
Method_1_DMS
275.mzML
DT3132_Data
Method_1_DMS
276.mzML
DT3132_Data
Method_1_DMS
277.mzML
DT3132_Data
Method_1_DMS
278.mzML
DT3132_Data
Method_1_DMS
279.mzML
DT3132_Data
Method_1_DMS
28.mzML
DT3132_Data
Method_1_DMS
280.mzML
DT3132_Data
Method_1_DMS
281.mzML
DT3132_Data
Method_1_DMS
282.mzML
DT3132_Data
Method_1_DMS
283.mzML
DT3132_Data
Method_1_DMS
284.mzML
DT3132_Data
Method_1_DMS
285.mzML
DT3132_Data
Method_1_DMS
286.mzML
DT3132_Data
Method_1_DMS
287.mzML
DT3132_Data
Method_1_DMS
288.mzML
DT3132_Data
Method_1_DMS
289.mzML
DT3132_Data
Method_1_DMS
29.mzML
DT3132_Data
Method_1_DMS
290.mzML
DT3132_Data
Method_1_DMS
291.mzML
DT3132_Data
Method_1_DMS
292.mzML
DT3132_Data
Method_1_DMS
293.mzML
DT3132_Data
Method_1_DMS
294.mzML
DT3132_Data
Method_1_DMS
295.mzML
DT3132_Data
Method_1_DMS
296.mzML
DT3132_Data
Method_1_DMS
297.mzML
DT3132_Data
Method_1_DMS
298.mzML
DT3132_Data
Method_1_DMS
299.mzML
DT3132_Data
Method_1_DMS
3.mzML
DT3132_Data
Method_1_DMS
30.mzML
DT3132_Data
Method_1_DMS
300.mzML
DT3132_Data
Method_1_DMS
301.mzML
DT3132_Data
Method_1_DMS
303.mzML
DT3132_Data
Method_1_DMS
304.mzML
DT3132_Data
Method_1_DMS
305.mzML
DT3132_Data
Method_1_DMS
306.mzML
DT3132_Data
Method_1_DMS
307.mzML
DT3132_Data
Method_1_DMS
308.mzML
DT3132_Data
Method_1_DMS
309.mzML
DT3132_Data
Method_1_DMS
31.mzML
DT3132_Data
Method_1_DMS
310.mzML
DT3132_Data
Method_1_DMS
311.mzML
DT3132_Data
Method_1_DMS
312.mzML
DT3132_Data
Method_1_DMS
313.mzML
DT3132_Data
Method_1_DMS
314.mzML
DT3132_Data
Method_1_DMS
315.mzML
DT3132_Data
Method_1_DMS
316.mzML
DT3132_Data
Method_1_DMS
317.mzML
DT3132_Data
Method_1_DMS
319.mzML
DT3132_Data
Method_1_DMS
32.mzML
DT3132_Data
Method_1_DMS
320.mzML
DT3132_Data
Method_1_DMS
321.mzML
DT3132_Data
Method_1_DMS
322.mzML
DT3132_Data
Method_1_DMS
323.mzML
DT3132_Data
Method_1_DMS
324.mzML
DT3132_Data
Method_1_DMS
325.mzML
DT3132_Data
Method_1_DMS
326.mzML
DT3132_Data
Method_1_DMS
327.mzML
DT3132_Data
Method_1_DMS
328.mzML
DT3132_Data
Method_1_DMS
329.mzML
DT3132_Data
Method_1_DMS
33.mzML
DT3132_Data
Method_1_DMS
330.mzML
DT3132_Data
Method_1_DMS
331.mzML
DT3132_Data
Method_1_DMS
332.mzML
DT3132_Data
Method_1_DMS
333.mzML
DT3132_Data
Method_1_DMS
334.mzML
DT3132_Data
Method_1_DMS
335.mzML
DT3132_Data
Method_1_DMS
336.mzML
DT3132_Data
Method_1_DMS
337.mzML
DT3132_Data
Method_1_DMS
338.mzML
DT3132_Data
Method_1_DMS
339.mzML
DT3132_Data
Method_1_DMS
34.mzML
DT3132_Data
Method_1_DMS
340.mzML
DT3132_Data
Method_1_DMS
341.mzML
DT3132_Data
Method_1_DMS
342.mzML
DT3132_Data
Method_1_DMS
343.mzML
DT3132_Data
Method_1_DMS
345.mzML
DT3132_Data
Method_1_DMS
346.mzML
DT3132_Data
Method_1_DMS
347.mzML
DT3132_Data
Method_1_DMS
348.mzML
DT3132_Data
Method_1_DMS
349.mzML
DT3132_Data
Method_1_DMS
35.mzML
DT3132_Data
Method_1_DMS
350.mzML
DT3132_Data
Method_1_DMS
351.mzML
DT3132_Data
Method_1_DMS
352.mzML
DT3132_Data
Method_1_DMS
354.mzML
DT3132_Data
Method_1_DMS
355.mzML
DT3132_Data
Method_1_DMS
356.mzML
DT3132_Data
Method_1_DMS
357.mzML
DT3132_Data
Method_1_DMS
358.mzML
DT3132_Data
Method_1_DMS
36.mzML
DT3132_Data
Method_1_DMS
37.mzML
DT3132_Data
Method_1_DMS
38.mzML
DT3132_Data
Method_1_DMS
39.mzML
DT3132_Data
Method_1_DMS
4.mzML
DT3132_Data
Method_1_DMS
40.mzML
DT3132_Data
Method_1_DMS
41.mzML
DT3132_Data
Method_1_DMS
42.mzML
DT3132_Data
Method_1_DMS
43.mzML
DT3132_Data
Method_1_DMS
44.mzML
DT3132_Data
Method_1_DMS
45.mzML
DT3132_Data
Method_1_DMS
46.mzML
DT3132_Data
Method_1_DMS
47.mzML
DT3132_Data
Method_1_DMS
48.mzML
DT3132_Data
Method_1_DMS
49.mzML
DT3132_Data
Method_1_DMS
5.mzML
DT3132_Data
Method_1_DMS
50.mzML
DT3132_Data
Method_1_DMS
51.mzML
DT3132_Data
Method_1_DMS
52.mzML
DT3132_Data
Method_1_DMS
53.mzML
DT3132_Data
Method_1_DMS
54.mzML
DT3132_Data
Method_1_DMS
55.mzML
DT3132_Data
Method_1_DMS
56.mzML
DT3132_Data
Method_1_DMS
57.mzML
DT3132_Data
Method_1_DMS
58.mzML
DT3132_Data
Method_1_DMS
59.mzML
DT3132_Data
Method_1_DMS
6.mzML
DT3132_Data
Method_1_DMS
60.mzML
DT3132_Data
Method_1_DMS
61.mzML
DT3132_Data
Method_1_DMS
62.mzML
DT3132_Data
Method_1_DMS
63.mzML
DT3132_Data
Method_1_DMS
64.mzML
DT3132_Data
Method_1_DMS
67.mzML
DT3132_Data
Method_1_DMS
68.mzML
DT3132_Data
Method_1_DMS
69.mzML
DT3132_Data
Method_1_DMS
70.mzML
DT3132_Data
Method_1_DMS
71.mzML
DT3132_Data
Method_1_DMS
73.mzML
DT3132_Data
Method_1_DMS
74.mzML
DT3132_Data
Method_1_DMS
75.mzML
DT3132_Data
Method_1_DMS
76.mzML
DT3132_Data
Method_1_DMS
77.mzML
DT3132_Data
Method_1_DMS
78.mzML
DT3132_Data
Method_1_DMS
79.mzML
DT3132_Data
Method_1_DMS
8.mzML
DT3132_Data
Method_1_DMS
80.mzML
DT3132_Data
Method_1_DMS
81.mzML
DT3132_Data
Method_1_DMS
82.mzML
DT3132_Data
Method_1_DMS
83.mzML
DT3132_Data
Method_1_DMS
84.mzML
DT3132_Data
Method_1_DMS
85.mzML
DT3132_Data
Method_1_DMS
86.mzML
DT3132_Data
Method_1_DMS
87.mzML
DT3132_Data
Method_1_DMS
88.mzML
DT3132_Data
Method_1_DMS
89.mzML
DT3132_Data
Method_1_DMS
9.mzML
DT3132_Data
Method_1_DMS
90.mzML
DT3132_Data
Method_1_DMS
91.mzML
DT3132_Data
Method_1_DMS
92.mzML
DT3132_Data
Method_1_DMS
93.mzML
DT3132_Data
Method_1_DMS
94.mzML
DT3132_Data
Method_1_DMS
95.mzML
DT3132_Data
Method_1_DMS
96.mzML
DT3132_Data
Method_1_DMS
97.mzML
DT3132_Data
Method_1_DMS
98.mzML
DT3132_Data
Method_1_DMS
99.mzML
DT3132_Data
Method_2_noDMS
1.mzML
DT3132_Data
Method_2_noDMS
100.mzML
DT3132_Data
Method_2_noDMS
101.mzML
DT3132_Data
Method_2_noDMS
102.mzML
DT3132_Data
Method_2_noDMS
103.mzML
DT3132_Data
Method_2_noDMS
104.mzML
DT3132_Data
Method_2_noDMS
105.mzML
DT3132_Data
Method_2_noDMS
106.mzML
DT3132_Data
Method_2_noDMS
107.mzML
DT3132_Data
Method_2_noDMS
108.mzML
DT3132_Data
Method_2_noDMS
109.mzML
DT3132_Data
Method_2_noDMS
11.mzML
DT3132_Data
Method_2_noDMS
110.mzML
DT3132_Data
Method_2_noDMS
111.mzML
DT3132_Data
Method_2_noDMS
112.mzML
DT3132_Data
Method_2_noDMS
113.mzML
DT3132_Data
Method_2_noDMS
114.mzML
DT3132_Data
Method_2_noDMS
115.mzML
DT3132_Data
Method_2_noDMS
116.mzML
DT3132_Data
Method_2_noDMS
117.mzML
DT3132_Data
Method_2_noDMS
118.mzML
DT3132_Data
Method_2_noDMS
119.mzML
DT3132_Data
Method_2_noDMS
12.mzML
DT3132_Data
Method_2_noDMS
120.mzML
DT3132_Data
Method_2_noDMS
122.mzML
DT3132_Data
Method_2_noDMS
124.mzML
DT3132_Data
Method_2_noDMS
126.mzML
DT3132_Data
Method_2_noDMS
127.mzML
DT3132_Data
Method_2_noDMS
128.mzML
DT3132_Data
Method_2_noDMS
129.mzML
DT3132_Data
Method_2_noDMS
130.mzML
DT3132_Data
Method_2_noDMS
131.mzML
DT3132_Data
Method_2_noDMS
132.mzML
DT3132_Data
Method_2_noDMS
133.mzML
DT3132_Data
Method_2_noDMS
134.mzML
DT3132_Data
Method_2_noDMS
135.mzML
DT3132_Data
Method_2_noDMS
136.mzML
DT3132_Data
Method_2_noDMS
137.mzML
DT3132_Data
Method_2_noDMS
138.mzML
DT3132_Data
Method_2_noDMS
139.mzML
DT3132_Data
Method_2_noDMS
14.mzML
DT3132_Data
Method_2_noDMS
140.mzML
DT3132_Data
Method_2_noDMS
141.mzML
DT3132_Data
Method_2_noDMS
142.mzML
DT3132_Data
Method_2_noDMS
143.mzML
DT3132_Data
Method_2_noDMS
144.mzML
DT3132_Data
Method_2_noDMS
145.mzML
DT3132_Data
Method_2_noDMS
146.mzML
DT3132_Data
Method_2_noDMS
147.mzML
DT3132_Data
Method_2_noDMS
148.mzML
DT3132_Data
Method_2_noDMS
149.mzML
DT3132_Data
Method_2_noDMS
15.mzML
DT3132_Data
Method_2_noDMS
150.mzML
DT3132_Data
Method_2_noDMS
151.mzML
DT3132_Data
Method_2_noDMS
152.mzML
DT3132_Data
Method_2_noDMS
153.mzML
DT3132_Data
Method_2_noDMS
154.mzML
DT3132_Data
Method_2_noDMS
155.mzML
DT3132_Data
Method_2_noDMS
156.mzML
DT3132_Data
Method_2_noDMS
157.mzML
DT3132_Data
Method_2_noDMS
158.mzML
DT3132_Data
Method_2_noDMS
159.mzML
DT3132_Data
Method_2_noDMS
16.mzML
DT3132_Data
Method_2_noDMS
161.mzML
DT3132_Data
Method_2_noDMS
163.mzML
DT3132_Data
Method_2_noDMS
164.mzML
DT3132_Data
Method_2_noDMS
165.mzML
DT3132_Data
Method_2_noDMS
166.mzML
DT3132_Data
Method_2_noDMS
167.mzML
DT3132_Data
Method_2_noDMS
168.mzML
DT3132_Data
Method_2_noDMS
169.mzML
DT3132_Data
Method_2_noDMS
17.mzML
DT3132_Data
Method_2_noDMS
170.mzML
DT3132_Data
Method_2_noDMS
171.mzML
DT3132_Data
Method_2_noDMS
172.mzML
DT3132_Data
Method_2_noDMS
173.mzML
DT3132_Data
Method_2_noDMS
174.mzML
DT3132_Data
Method_2_noDMS
175.mzML
DT3132_Data
Method_2_noDMS
176.mzML
DT3132_Data
Method_2_noDMS
177.mzML
DT3132_Data
Method_2_noDMS
178.mzML
DT3132_Data
Method_2_noDMS
179.mzML
DT3132_Data
Method_2_noDMS
18.mzML
DT3132_Data
Method_2_noDMS
180.mzML
DT3132_Data
Method_2_noDMS
181.mzML
DT3132_Data
Method_2_noDMS
182.mzML
DT3132_Data
Method_2_noDMS
183.mzML
DT3132_Data
Method_2_noDMS
184.mzML
DT3132_Data
Method_2_noDMS
185.mzML
DT3132_Data
Method_2_noDMS
186.mzML
DT3132_Data
Method_2_noDMS
188.mzML
DT3132_Data
Method_2_noDMS
189.mzML
DT3132_Data
Method_2_noDMS
19.mzML
DT3132_Data
Method_2_noDMS
190.mzML
DT3132_Data
Method_2_noDMS
191.mzML
DT3132_Data
Method_2_noDMS
192.mzML
DT3132_Data
Method_2_noDMS
193.mzML
DT3132_Data
Method_2_noDMS
194.mzML
DT3132_Data
Method_2_noDMS
195.mzML
DT3132_Data
Method_2_noDMS
197.mzML
DT3132_Data
Method_2_noDMS
198.mzML
DT3132_Data
Method_2_noDMS
199.mzML
DT3132_Data
Method_2_noDMS
2.mzML
DT3132_Data
Method_2_noDMS
20.mzML
DT3132_Data
Method_2_noDMS
201.mzML
DT3132_Data
Method_2_noDMS
203.mzML
DT3132_Data
Method_2_noDMS
204.mzML
DT3132_Data
Method_2_noDMS
205.mzML
DT3132_Data
Method_2_noDMS
206.mzML
DT3132_Data
Method_2_noDMS
207.mzML
DT3132_Data
Method_2_noDMS
208.mzML
DT3132_Data
Method_2_noDMS
209.mzML
DT3132_Data
Method_2_noDMS
21.mzML
DT3132_Data
Method_2_noDMS
210.mzML
DT3132_Data
Method_2_noDMS
211.mzML
DT3132_Data
Method_2_noDMS
213.mzML
DT3132_Data
Method_2_noDMS
214.mzML
DT3132_Data
Method_2_noDMS
215.mzML
DT3132_Data
Method_2_noDMS
216.mzML
DT3132_Data
Method_2_noDMS
217.mzML
DT3132_Data
Method_2_noDMS
218.mzML
DT3132_Data
Method_2_noDMS
219.mzML
DT3132_Data
Method_2_noDMS
22.mzML
DT3132_Data
Method_2_noDMS
220.mzML
DT3132_Data
Method_2_noDMS
221.mzML
DT3132_Data
Method_2_noDMS
222.mzML
DT3132_Data
Method_2_noDMS
223.mzML
DT3132_Data
Method_2_noDMS
224.mzML
DT3132_Data
Method_2_noDMS
225.mzML
DT3132_Data
Method_2_noDMS
226.mzML
DT3132_Data
Method_2_noDMS
227.mzML
DT3132_Data
Method_2_noDMS
228.mzML
DT3132_Data
Method_2_noDMS
229.mzML
DT3132_Data
Method_2_noDMS
23.mzML
DT3132_Data
Method_2_noDMS
230.mzML
DT3132_Data
Method_2_noDMS
231.mzML
DT3132_Data
Method_2_noDMS
232.mzML
DT3132_Data
Method_2_noDMS
233.mzML
DT3132_Data
Method_2_noDMS
234.mzML
DT3132_Data
Method_2_noDMS
235.mzML
DT3132_Data
Method_2_noDMS
237.mzML
DT3132_Data
Method_2_noDMS
238.mzML
DT3132_Data
Method_2_noDMS
239.mzML
DT3132_Data
Method_2_noDMS
24.mzML
DT3132_Data
Method_2_noDMS
240.mzML
DT3132_Data
Method_2_noDMS
242.mzML
DT3132_Data
Method_2_noDMS
243.mzML
DT3132_Data
Method_2_noDMS
244.mzML
DT3132_Data
Method_2_noDMS
245.mzML
DT3132_Data
Method_2_noDMS
246.mzML
DT3132_Data
Method_2_noDMS
248.mzML
DT3132_Data
Method_2_noDMS
249.mzML
DT3132_Data
Method_2_noDMS
25.mzML
DT3132_Data
Method_2_noDMS
250.mzML
DT3132_Data
Method_2_noDMS
251.mzML
DT3132_Data
Method_2_noDMS
252.mzML
DT3132_Data
Method_2_noDMS
253.mzML
DT3132_Data
Method_2_noDMS
254.mzML
DT3132_Data
Method_2_noDMS
255.mzML
DT3132_Data
Method_2_noDMS
256.mzML
DT3132_Data
Method_2_noDMS
257.mzML
DT3132_Data
Method_2_noDMS
258.mzML
DT3132_Data
Method_2_noDMS
259.mzML
DT3132_Data
Method_2_noDMS
26.mzML
DT3132_Data
Method_2_noDMS
260.mzML
DT3132_Data
Method_2_noDMS
261.mzML
DT3132_Data
Method_2_noDMS
262.mzML
DT3132_Data
Method_2_noDMS
263.mzML
DT3132_Data
Method_2_noDMS
264.mzML
DT3132_Data
Method_2_noDMS
265.mzML
DT3132_Data
Method_2_noDMS
266.mzML
DT3132_Data
Method_2_noDMS
267.mzML
DT3132_Data
Method_2_noDMS
268.mzML
DT3132_Data
Method_2_noDMS
269.mzML
DT3132_Data
Method_2_noDMS
27.mzML
DT3132_Data
Method_2_noDMS
270.mzML
DT3132_Data
Method_2_noDMS
271.mzML
DT3132_Data
Method_2_noDMS
272.mzML
DT3132_Data
Method_2_noDMS
273.mzML
DT3132_Data
Method_2_noDMS
274.mzML
DT3132_Data
Method_2_noDMS
275.mzML
DT3132_Data
Method_2_noDMS
276.mzML
DT3132_Data
Method_2_noDMS
277.mzML
DT3132_Data
Method_2_noDMS
278.mzML
DT3132_Data
Method_2_noDMS
279.mzML
DT3132_Data
Method_2_noDMS
28.mzML
DT3132_Data
Method_2_noDMS
280.mzML
DT3132_Data
Method_2_noDMS
281.mzML
DT3132_Data
Method_2_noDMS
282.mzML
DT3132_Data
Method_2_noDMS
283.mzML
DT3132_Data
Method_2_noDMS
284.mzML
DT3132_Data
Method_2_noDMS
285.mzML
DT3132_Data
Method_2_noDMS
286.mzML
DT3132_Data
Method_2_noDMS
287.mzML
DT3132_Data
Method_2_noDMS
288.mzML
DT3132_Data
Method_2_noDMS
289.mzML
DT3132_Data
Method_2_noDMS
29.mzML
DT3132_Data
Method_2_noDMS
290.mzML
DT3132_Data
Method_2_noDMS
291.mzML
DT3132_Data
Method_2_noDMS
292.mzML
DT3132_Data
Method_2_noDMS
293.mzML
DT3132_Data
Method_2_noDMS
294.mzML
DT3132_Data
Method_2_noDMS
295.mzML
DT3132_Data
Method_2_noDMS
296.mzML
DT3132_Data
Method_2_noDMS
297.mzML
DT3132_Data
Method_2_noDMS
298.mzML
DT3132_Data
Method_2_noDMS
299.mzML
DT3132_Data
Method_2_noDMS
3.mzML
DT3132_Data
Method_2_noDMS
30.mzML
DT3132_Data
Method_2_noDMS
300.mzML
DT3132_Data
Method_2_noDMS
301.mzML
DT3132_Data
Method_2_noDMS
303.mzML
DT3132_Data
Method_2_noDMS
304.mzML
DT3132_Data
Method_2_noDMS
305.mzML
DT3132_Data
Method_2_noDMS
306.mzML
DT3132_Data
Method_2_noDMS
307.mzML
DT3132_Data
Method_2_noDMS
308.mzML
DT3132_Data
Method_2_noDMS
309.mzML
DT3132_Data
Method_2_noDMS
31.mzML
DT3132_Data
Method_2_noDMS
310.mzML
DT3132_Data
Method_2_noDMS
311.mzML
DT3132_Data
Method_2_noDMS
312.mzML
DT3132_Data
Method_2_noDMS
313.mzML
DT3132_Data
Method_2_noDMS
314.mzML
DT3132_Data
Method_2_noDMS
315.mzML
DT3132_Data
Method_2_noDMS
316.mzML
DT3132_Data
Method_2_noDMS
317.mzML
DT3132_Data
Method_2_noDMS
319.mzML
DT3132_Data
Method_2_noDMS
32.mzML
DT3132_Data
Method_2_noDMS
320.mzML
DT3132_Data
Method_2_noDMS
321.mzML
DT3132_Data
Method_2_noDMS
322.mzML
DT3132_Data
Method_2_noDMS
323.mzML
DT3132_Data
Method_2_noDMS
324.mzML
DT3132_Data
Method_2_noDMS
325.mzML
DT3132_Data
Method_2_noDMS
326.mzML
DT3132_Data
Method_2_noDMS
327.mzML
DT3132_Data
Method_2_noDMS
328.mzML
DT3132_Data
Method_2_noDMS
329.mzML
DT3132_Data
Method_2_noDMS
33.mzML
DT3132_Data
Method_2_noDMS
330.mzML
DT3132_Data
Method_2_noDMS
331.mzML
DT3132_Data
Method_2_noDMS
332.mzML
DT3132_Data
Method_2_noDMS
333.mzML
DT3132_Data
Method_2_noDMS
334.mzML
DT3132_Data
Method_2_noDMS
335.mzML
DT3132_Data
Method_2_noDMS
336.mzML
DT3132_Data
Method_2_noDMS
337.mzML
DT3132_Data
Method_2_noDMS
338.mzML
DT3132_Data
Method_2_noDMS
339.mzML
DT3132_Data
Method_2_noDMS
34.mzML
DT3132_Data
Method_2_noDMS
340.mzML
DT3132_Data
Method_2_noDMS
341.mzML
DT3132_Data
Method_2_noDMS
342.mzML
DT3132_Data
Method_2_noDMS
343.mzML
DT3132_Data
Method_2_noDMS
345.mzML
DT3132_Data
Method_2_noDMS
346.mzML
DT3132_Data
Method_2_noDMS
347.mzML
DT3132_Data
Method_2_noDMS
348.mzML
DT3132_Data
Method_2_noDMS
349.mzML
DT3132_Data
Method_2_noDMS
35.mzML
DT3132_Data
Method_2_noDMS
350.mzML
DT3132_Data
Method_2_noDMS
351.mzML
DT3132_Data
Method_2_noDMS
352.mzML
DT3132_Data
Method_2_noDMS
354.mzML
DT3132_Data
Method_2_noDMS
355.mzML
DT3132_Data
Method_2_noDMS
356.mzML
DT3132_Data
Method_2_noDMS
357.mzML
DT3132_Data
Method_2_noDMS
358.mzML
DT3132_Data
Method_2_noDMS
36.mzML
DT3132_Data
Method_2_noDMS
37.mzML
DT3132_Data
Method_2_noDMS
38.mzML
DT3132_Data
Method_2_noDMS
39.mzML
DT3132_Data
Method_2_noDMS
4.mzML
DT3132_Data
Method_2_noDMS
40.mzML
DT3132_Data
Method_2_noDMS
41.mzML
DT3132_Data
Method_2_noDMS
42.mzML
DT3132_Data
Method_2_noDMS
43.mzML
DT3132_Data
Method_2_noDMS
44.mzML
DT3132_Data
Method_2_noDMS
45.mzML
DT3132_Data
Method_2_noDMS
46.mzML
DT3132_Data
Method_2_noDMS
47.mzML
DT3132_Data
Method_2_noDMS
48.mzML
DT3132_Data
Method_2_noDMS
49.mzML
DT3132_Data
Method_2_noDMS
5.mzML
DT3132_Data
Method_2_noDMS
50.mzML
DT3132_Data
Method_2_noDMS
51.mzML
DT3132_Data
Method_2_noDMS
52.mzML
DT3132_Data
Method_2_noDMS
53.mzML
DT3132_Data
Method_2_noDMS
54.mzML
DT3132_Data
Method_2_noDMS
55.mzML
DT3132_Data
Method_2_noDMS
56.mzML
DT3132_Data
Method_2_noDMS
57.mzML
DT3132_Data
Method_2_noDMS
58.mzML
DT3132_Data
Method_2_noDMS
59.mzML
DT3132_Data
Method_2_noDMS
6.mzML
DT3132_Data
Method_2_noDMS
60.mzML
DT3132_Data
Method_2_noDMS
61.mzML
DT3132_Data
Method_2_noDMS
62.mzML
DT3132_Data
Method_2_noDMS
63.mzML
DT3132_Data
Method_2_noDMS
64.mzML
DT3132_Data
Method_2_noDMS
67.mzML
DT3132_Data
Method_2_noDMS
68.mzML
DT3132_Data
Method_2_noDMS
69.mzML
DT3132_Data
Method_2_noDMS
70.mzML
DT3132_Data
Method_2_noDMS
71.mzML
DT3132_Data
Method_2_noDMS
73.mzML
DT3132_Data
Method_2_noDMS
74.mzML
DT3132_Data
Method_2_noDMS
75.mzML
DT3132_Data
Method_2_noDMS
76.mzML
DT3132_Data
Method_2_noDMS
77.mzML
DT3132_Data
Method_2_noDMS
78.mzML
DT3132_Data
Method_2_noDMS
79.mzML
DT3132_Data
Method_2_noDMS
8.mzML
DT3132_Data
Method_2_noDMS
80.mzML
DT3132_Data
Method_2_noDMS
81.mzML
DT3132_Data
Method_2_noDMS
82.mzML
DT3132_Data
Method_2_noDMS
83.mzML
DT3132_Data
Method_2_noDMS
84.mzML
DT3132_Data
Method_2_noDMS
85.mzML
DT3132_Data
Method_2_noDMS
86.mzML
DT3132_Data
Method_2_noDMS
87.mzML
DT3132_Data
Method_2_noDMS
88.mzML
DT3132_Data
Method_2_noDMS
89.mzML
DT3132_Data
Method_2_noDMS
9.mzML
DT3132_Data
Method_2_noDMS
90.mzML
DT3132_Data
Method_2_noDMS
91.mzML
DT3132_Data
Method_2_noDMS
92.mzML
DT3132_Data
Method_2_noDMS
93.mzML
DT3132_Data
Method_2_noDMS
94.mzML
DT3132_Data
Method_2_noDMS
95.mzML
DT3132_Data
Method_2_noDMS
96.mzML
DT3132_Data
Method_2_noDMS
97.mzML
DT3132_Data
Method_2_noDMS
98.mzML
DT3132_Data
Method_2_noDMS
99.mzML
/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  1%|          | 16/3128 [01:14<3:32:46,  4.10s/it]/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  1%|          | 18/3128 [01:17<2:46:42,  3.22s/it]  1%|          | 22/3128 [01:17<1:21:57,  1.58s/it]/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  1%|          | 24/3128 [01:25<1:53:22,  2.19s/it]  1%|          | 28/3128 [01:25<1:04:51,  1.26s/it]IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 670 rows!
Extracted information for 670 samples.
Processing  ST003269
No raw data detected. Ignoring ST003269
Processing  ST001290
Initiating REDU-table generation for AN002143
Rest length is 25
raw file key found.
found filename_raw to filename_base match
Initiating REDU-table generation for AN002144
Rest length is 25
raw file key found.
found filename_raw to filename_base match
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
  : missing value
MBData
MB_PT_Neg
CASE40.raw
MBData
MB_PT_Neg
CASE41.raw
MBData
MB_PT_Neg
SG105.raw
MBData
MB_PT_Neg
SG113.raw
MBData
MB_PT_Neg
SG138.raw
MBData
MB_PT_Neg
SG174.raw
MBData
MB_PT_Neg
SG175.raw
MBData
MB_PT_Neg
SG191.raw
MBData
MB_PT_Neg
SG203.raw
MBData
MB_PT_Neg
SG204.raw
MBData
MB_PT_Neg
SG215.raw
MBData
MB_PT_Neg
SG217.raw
MBData
MB_PT_Neg
SG218.raw
MBData
MB_PT_Neg
SG221.raw
MBData
MB_PT_Neg
SG222.raw
MBData
MB_PT_Neg
SG223.raw
MBData
MB_PT_Neg
SG228.raw
MBData
MB_PT_Neg
SGTA.raw
MBData
MB_PT_Neg
SGTA10.raw
MBData
MB_PT_Neg
SGTA11.raw
MBData
MB_PT_Neg
SGTA12.raw
MBData
MB_PT_Neg
SGTA13.raw
MBData
MB_PT_Neg
SGTA3.raw
MBData
MB_PT_Neg
SGTA4.raw
MBData
MB_PT_Neg
SGTA9.raw
MBData
MB_PT_Pos
CASE40.raw
MBData
MB_PT_Pos
CASE41.raw
MBData
MB_PT_Pos
SG105.raw
MBData
MB_PT_Pos
SG113.raw
MBData
MB_PT_Pos
SG138.raw
MBData
MB_PT_Pos
SG174.raw
MBData
MB_PT_Pos
SG175.raw
MBData
MB_PT_Pos
SG191.raw
MBData
MB_PT_Pos
SG203.raw
MBData
MB_PT_Pos
SG204.raw
MBData
MB_PT_Pos
SG215.raw
MBData
MB_PT_Pos
SG217.raw
MBData
MB_PT_Pos
SG218.raw
MBData
MB_PT_Pos
SG221.raw
MBData
MB_PT_Pos
SG222.raw
MBData
MB_PT_Pos
SG223.raw
MBData
MB_PT_Pos
SG228.raw
MBData
MB_PT_Pos
SGTA.raw
MBData
MB_PT_Pos
SGTA10.raw
MBData
MB_PT_Pos
SGTA11.raw
MBData
MB_PT_Pos
SGTA12.raw
MBData
MB_PT_Pos
SGTA13.raw
MBData
MB_PT_Pos
SGTA3.raw
MBData
MB_PT_Pos
SGTA4.raw
MBData
MB_PT_Pos
SGTA9.raw
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 50 rows!
Extracted information for 50 samples.
Processing  ST000942
No raw data detected. Ignoring ST000942
Processing  ST000576
No raw data detected. Ignoring ST000576
Processing  ST003309
No raw data detected. Ignoring ST003309
Processing  ST000474
No raw data detected. Ignoring ST000474
Processing  ST002220
Initiating REDU-table generation for AN003629
Rest length is 20
raw file key found.
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
  : missing value
MS42
MS42-01.raw
MS42
MS42-02.raw
MS42
MS42-03.raw
MS42
MS42-04.raw
MS42
MS42-05.raw
MS42
MS42-06.raw
MS42
MS42-07.raw
MS42
MS42-08.raw
MS42
MS42-09.raw
MS42
MS42-10.raw
MS42
MS42-11.raw
MS42
MS42-12.raw
MS42
MS42-13.raw
MS42
MS42-14.raw
MS42
MS42-15.raw
MS42
MS42-16.raw
MS42
MS42-17.raw
MS42
MS42-18.raw
MS42
MS42-19.raw
MS42
MS42-20.raw
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 20 rows!
Extracted information for 20 samples.
Processing  ST002341
Initiating REDU-table generation for AN003824
Rest length is 104
raw file key found.
found filename_raw to filename_base match
Initiating REDU-table generation for AN003825
Rest length is 104
raw file key found.
found filename_raw to filename_base match
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
NCBITaxonomy:
  : missing value
SubjectIdentifierAsRecorded:
  : missing value
UBERONBodyPartName:
  : missing value
Blank_neg_01.mzML
Blank_neg_02.mzML
Blank_neg_03.mzML
Blank_neg_04.mzML
Blank_neg_05.mzML
Blank_neg_06.mzML
Blank_neg_07.mzML
Blank_neg_08.mzML
Blank_pos_01.mzML
Blank_pos_02.mzML
Blank_pos_03.mzML
Blank_pos_04.mzML
Blank_pos_05.mzML
Blank_pos_06.mzML
Blank_pos_07.mzML
Blank_pos_08.mzML
COLO205_neg_01.mzML
COLO205_neg_02.mzML
COLO205_neg_03.mzML
COLO205_neg_04.mzML
COLO205_neg_05.mzML
COLO205_neg_06.mzML
COLO205_neg_07.mzML
COLO205_neg_08.mzML
COLO205_neg_09.mzML
COLO205_pos_01.mzML
COLO205_pos_02.mzML
COLO205_pos_03.mzML
COLO205_pos_04.mzML
COLO205_pos_05.mzML
COLO205_pos_06.mzML
COLO205_pos_07.mzML
COLO205_pos_08.mzML
COLO205_pos_09.mzML
HT29_neg_01.mzML
HT29_neg_02.mzML
HT29_neg_03.mzML
HT29_neg_04.mzML
HT29_neg_05.mzML
HT29_neg_06.mzML
HT29_neg_07.mzML
HT29_neg_08.mzML
HT29_neg_09.mzML
HT29_pos_01.mzML
HT29_pos_02.mzML
HT29_pos_03.mzML
HT29_pos_04.mzML
HT29_pos_05.mzML
HT29_pos_06.mzML
HT29_pos_07.mzML
HT29_pos_08.mzML
HT29_pos_09.mzML
QC_neg_01.mzML
QC_neg_02.mzML
QC_neg_03.mzML
QC_neg_04.mzML
QC_neg_05.mzML
QC_neg_06.mzML
QC_neg_07.mzML
QC_neg_08.mzML
QC_pos_01.mzML
QC_pos_02.mzML
QC_pos_03.mzML
QC_pos_04.mzML
QC_pos_05.mzML
QC_pos_06.mzML
QC_pos_07.mzML
QC_pos_08.mzML
SW480_neg_01.mzML
SW480_neg_02.mzML
SW480_neg_03.mzML
SW480_neg_04.mzML
SW480_neg_05.mzML
SW480_neg_06.mzML
SW480_neg_07.mzML
SW480_neg_08.mzML
SW480_neg_09.mzML
SW480_pos_01.mzML
SW480_pos_02.mzML
SW480_pos_03.mzML
SW480_pos_04.mzML
SW480_pos_05.mzML
SW480_pos_06.mzML
SW480_pos_07.mzML
SW480_pos_08.mzML
SW480_pos_09.mzML
SW620_neg_01.mzML
SW620_neg_02.mzML
SW620_neg_03.mzML
SW620_neg_04.mzML
SW620_neg_05.mzML
SW620_neg_06.mzML
SW620_neg_07.mzML
SW620_neg_08.mzML
SW620_neg_09.mzML
SW620_pos_01.mzML
SW620_pos_02.mzML
SW620_pos_03.mzML
SW620_pos_04.mzML
SW620_pos_05.mzML
SW620_pos_06.mzML
SW620_pos_07.mzML
SW620_pos_08.mzML
SW620_pos_09.mzML
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 104 rows!
Extracted information for 104 samples.
Processing  ST003178
No raw data detected. Ignoring ST003178
Processing  ST000251
No raw data detected. Ignoring ST000251
Processing  ST000592
No raw data detected. Ignoring ST000592
Processing  ST002212
No raw data detected. Ignoring ST002212
Processing  ST002217
Initiating REDU-table generation for AN003626
Rest length is 20
raw file key found.
found filename_raw to filename_base match
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
NCBITaxonomy:
  : missing value
SubjectIdentifierAsRecorded:
  : missing value
UBERONBodyPartName:
  : missing value
Choline_1.raw
Choline_2.raw
Choline_3.raw
Choline_4.raw
Choline_5.raw
Control_1.raw
Control_2.raw
Control_3.raw
Control_4.raw
Control_5.raw
QC-10.raw
QC-11.raw
QC-12.raw
QC-13.raw
QC-4.raw
QC-5.raw
QC-6.raw
QC-7.raw
QC-8.raw
QC-9.raw
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 20 rows!
Extracted information for 20 samples.
Processing  ST002475
Initiating REDU-table generation for AN004042
Rest length is 124
raw file key found.
found filename_raw to filename_base match
Initiating REDU-table generation for AN004043
Rest length is 124
raw file key found.
found filename_raw to filename_base match
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
  : missing value
NEG2
HP10_NEG.wiff
NEG2
HP11_NEG.wiff
NEG2
HP12_NEG.wiff
NEG2
HP13_NEG.wiff
NEG2
HP14_NEG.wiff
NEG2
HP15_NEG.wiff
NEG2
HP16_NEG.wiff
NEG2
HP17_NEG.wiff
NEG2
HP18_NEG.wiff
NEG2
HP19_NEG.wiff
NEG2
HP1_NEG.wiff
NEG2
HP20_NEG.wiff
NEG2
HP21_NEG.wiff
NEG2
HP22_NEG.wiff
NEG2
HP23_NEG.wiff
NEG2
HP24_NEG.wiff
NEG2
HP25_NEG.wiff
NEG2
HP2_NEG.wiff
NEG2
HP3_NEG.wiff
NEG2
HP4_NEG.wiff
NEG2
HP5_NEG.wiff
NEG2
HP6_NEG.wiff
NEG2
HP7_NEG.wiff
NEG2
HP8_NEG.wiff
NEG2
HP9_NEG.wiff
NEG2
P10_NEG.wiff
NEG2
P11_NEG.wiff
NEG2
P12_NEG.wiff
NEG2
P13_NEG.wiff
NEG2
P14_NEG.wiff
NEG2
P15_NEG.wiff
NEG2
P16_NEG.wiff
NEG2
P17_NEG.wiff
NEG2
P18_NEG.wiff
NEG2
P1_NEG.wiff
NEG2
P2_NEG.wiff
NEG2
P3_NEG.wiff
NEG2
P4_NEG.wiff
NEG2
P5_NEG.wiff
NEG2
P6_NEG.wiff
NEG2
P7_NEG.wiff
NEG2
P8_NEG.wiff
NEG2
P9_NEG.wiff
NEG2
PB10_NEG.wiff
NEG2
PB11_NEG.wiff
NEG2
PB12_NEG.wiff
NEG2
PB13_NEG.wiff
NEG2
PB14_NEG.wiff
NEG2
PB15_NEG.wiff
NEG2
PB16_NEG.wiff
NEG2
PB17_NEG.wiff
NEG2
PB18_NEG.wiff
NEG2
PB19_NEG.wiff
NEG2
PB1_NEG.wiff
NEG2
PB2_NEG.wiff
NEG2
PB3_NEG.wiff
NEG2
PB4_NEG.wiff
NEG2
PB5_NEG.wiff
NEG2
PB6_NEG.wiff
NEG2
PB7_NEG.wiff
NEG2
PB8_NEG.wiff
NEG2
PB9_NEG.wiff
POS2
HP10_POS.wiff
POS2
HP11_POS.wiff
POS2
HP12_POS.wiff
POS2
HP13_POS.wiff
POS2
HP14_POS.wiff/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  1%|          | 30/3128 [01:34<1:43:48,  2.01s/it]  1%|          | 32/3128 [01:34<1:18:29,  1.52s/it]
POS2
HP15_POS.wiff
POS2
HP16_POS.wiff
POS2
HP17_POS.wiff
POS2
HP18_POS.wiff
POS2
HP19_POS.wiff
POS2
HP1_POS.wiff
POS2
HP20_POS.wiff
POS2
HP21_POS.wiff
POS2
HP22_POS.wiff
POS2
HP23_POS.wiff
POS2
HP24_POS.wiff
POS2
HP25_POS.wiff
POS2
HP2_POS.wiff
POS2
HP3_POS.wiff
POS2
HP4_POS.wiff
POS2
HP5_POS.wiff
POS2
HP6_POS.wiff
POS2
HP7_POS.wiff
POS2
HP8_POS.wiff
POS2
HP9_POS.wiff
POS2
P10_POS.wiff
POS2
P11_POS.wiff
POS2
P12_POS.wiff
POS2
P13_POS.wiff
POS2
P14_POS.wiff
POS2
P15_POS.wiff
POS2
P16_POS.wiff
POS2
P17_POS.wiff
POS2
P18_POS.wiff
POS2
P1_POS.wiff
POS2
P2_POS.wiff
POS2
P3_POS.wiff
POS2
P4_POS.wiff
POS2
P5_POS.wiff
POS2
P6_POS.wiff
POS2
P7_POS.wiff
POS2
P8_POS.wiff
POS2
P9_POS.wiff
POS2
PB10_POS.wiff
POS2
PB11_POS.wiff
POS2
PB12_POS.wiff
POS2
PB13_POS.wiff
POS2
PB14_POS.wiff
POS2
PB15_POS.wiff
POS2
PB16_POS.wiff
POS2
PB17_POS.wiff
POS2
PB18_POS.wiff
POS2
PB19_POS.wiff
POS2
PB1_POS.wiff
POS2
PB2_POS.wiff
POS2
PB3_POS.wiff
POS2
PB4_POS.wiff
POS2
PB5_POS.wiff
POS2
PB6_POS.wiff
POS2
PB7_POS.wiff
POS2
PB8_POS.wiff
POS2
PB9_POS.wiff
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 124 rows!
Extracted information for 124 samples.
Processing  ST003143
No raw data detected. Ignoring ST003143
Processing  ST001185
No raw data detected. Ignoring ST001185
Processing  ST003044
Initiating REDU-table generation for AN004993
Rest length is 50
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..

Mapping potential matches:   0%|          | 0/50 [00:00<?, ?it/s][A
Mapping potential matches:  48%|████▊     | 24/50 [00:00<00:00, 236.72it/s][A
Mapping potential matches:  96%|█████████▌| 48/50 [00:00<00:00, 232.14it/s][AMapping potential matches: 100%|██████████| 50/50 [00:00<00:00, 232.35it/s]
analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
Initiating REDU-table generation for AN004994
Rest length is 50
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..

Mapping potential matches:   0%|          | 0/50 [00:00<?, ?it/s][A
Mapping potential matches:  48%|████▊     | 24/50 [00:00<00:00, 232.57it/s][A
Mapping potential matches:  98%|█████████▊| 49/50 [00:00<00:00, 238.11it/s][AMapping potential matches: 100%|██████████| 50/50 [00:00<00:00, 236.95it/s]
/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  1%|          | 34/3128 [01:40<1:33:59,  1.82s/it]analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
ENVOEnvironmentBiome: ADDED!
ENVOEnvironmentMaterial: ADDED!
SubjectIdentifierAsRecorded:
  : missing value
negative raw files - plasma
DS1-28-01-.raw
negative raw files - plasma
DS1-28-02-.raw
negative raw files - plasma
DS1-28-03-.raw
negative raw files - plasma
DS1-28-04-.raw
negative raw files - plasma
DS1-28-05-.raw
negative raw files - plasma
DS1-28-06-.raw
negative raw files - plasma
DS1-28-07-.raw
negative raw files - plasma
DS1-28-08-.raw
negative raw files - plasma
DS1-28-09-.raw
negative raw files - plasma
DS1-28-10-.raw
negative raw files - plasma
DS1-28-11-.raw
negative raw files - plasma
DS1-28-12-.raw
negative raw files - plasma
DS1-28-13-.raw
negative raw files - plasma
DS1-28-14-.raw
negative raw files - plasma
DS1-28-15-.raw
negative raw files - plasma
DS1-28-16-.raw
negative raw files - plasma
DS1-28-17-.raw
negative raw files - plasma
DS1-28-18-.raw
negative raw files - plasma
DS1-28-19-.raw
negative raw files - plasma
DS1-28-20-.raw
negative raw files - plasma
DS1-28-21-.raw
negative raw files - plasma
DS1-28-25-.raw
negative raw files - plasma
DS1-28-26-.raw
negative raw files - plasma
DS1-28-27-.raw
negative raw files - plasma
DS1-28-28-.raw
negative raw files - plasma
DS1-28-29-.raw
negative raw files - plasma
DS1-28-30-.raw
negative raw files - plasma
DS1-28-34-.raw
negative raw files - plasma
DS1-28-35-.raw
negative raw files - plasma
DS1-28-36-.raw
negative raw files - plasma
DS1-28-37-.raw
negative raw files - plasma
DS1-28-38-.raw
negative raw files - plasma
DS1-28-39-.raw
negative raw files - plasma
DS1-28-40-.raw
negative raw files - plasma
DS1-28-41-.raw
negative raw files - plasma
DS1-28-42-.raw
negative raw files - plasma
DS1-28-43-.raw
negative raw files - plasma
DS1-28-44-.raw
negative raw files - plasma
DS1-28-45-.raw
negative raw files - plasma
DS1-28-46-.raw
negative raw files - plasma
DS1-28-47-.raw
negative raw files - plasma
DS1-28-48-.raw
negative raw files - plasma
DS1-28-49-.raw
negative raw files - plasma
DS1-28-50-.raw
negative raw files - plasma
DS1-28-51-.raw
negative raw files - plasma
DS1-28-52-.raw
negative raw files - plasma
DS1-28-53-.raw
negative raw files - plasma
DS1-28-54-.raw
negative raw files - plasma
DS1-28-55-.raw
negative raw files - plasma
DS1-28-56-.raw
positive raw files - plasma
DS1-28-01+.raw
positive raw files - plasma
DS1-28-02+.raw
positive raw files - plasma
DS1-28-03+.raw
positive raw files - plasma
DS1-28-04+.raw
positive raw files - plasma
DS1-28-05+.raw
positive raw files - plasma
DS1-28-06+.raw
positive raw files - plasma
DS1-28-07+.raw
positive raw files - plasma
DS1-28-08+.raw
positive raw files - plasma
DS1-28-09+.raw
positive raw files - plasma
DS1-28-10+.raw
positive raw files - plasma
DS1-28-11+.raw
positive raw files - plasma
DS1-28-12+.raw
positive raw files - plasma
DS1-28-13+.raw
positive raw files - plasma
DS1-28-14+.raw
positive raw files - plasma
DS1-28-15+.raw
positive raw files - plasma
DS1-28-16+.raw
positive raw files - plasma
DS1-28-17+.raw
positive raw files - plasma
DS1-28-18+.raw
positive raw files - plasma
DS1-28-19+.raw
positive raw files - plasma
DS1-28-20+.raw
positive raw files - plasma
DS1-28-21+.raw
positive raw files - plasma
DS1-28-25+.raw
positive raw files - plasma
DS1-28-26+.raw
positive raw files - plasma
DS1-28-27+.raw
positive raw files - plasma
DS1-28-28+.raw
positive raw files - plasma
DS1-28-29+.raw
positive raw files - plasma
DS1-28-30+.raw
positive raw files - plasma
DS1-28-35+.raw
positive raw files - plasma
DS1-28-36+.raw
positive raw files - plasma
DS1-28-37+.raw
positive raw files - plasma
DS1-28-38+.raw
positive raw files - plasma
DS1-28-39+.raw
positive raw files - plasma
DS1-28-40+.raw
positive raw files - plasma
DS1-28-41+.raw
positive raw files - plasma
DS1-28-42+.raw
positive raw files - plasma
DS1-28-43+.raw
positive raw files - plasma
DS1-28-44+.raw
positive raw files - plasma
DS1-28-45+.raw
positive raw files - plasma
DS1-28-46+.raw
positive raw files - plasma
DS1-28-47+.raw
positive raw files - plasma
DS1-28-48+.raw
positive raw files - plasma
DS1-28-49+.raw
positive raw files - plasma
DS1-28-50+.raw
positive raw files - plasma
DS1-28-51+.raw
positive raw files - plasma
DS1-28-52+.raw
positive raw files - plasma
DS1-28-53+.raw
positive raw files - plasma
DS1-28-54+.raw
positive raw files - plasma
DS1-28-55+.raw
positive raw files - plasma
DS1-28-56+.raw
IGNORED:  positive_polarity_count
IGNORED:  negative_polarity_count
Number of rows removed due to not enough metadata: 0
Returning 99 rows!
Extracted information for 99 samples.
Processing  ST001253
No raw data detected. Ignoring ST001253
Processing  ST001359
Initiating REDU-table generation for AN002263
Rest length is 6
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..

Mapping potential matches:   0%|          | 0/6 [00:00<?, ?it/s][AMapping potential matches: 100%|██████████| 6/6 [00:00<00:00, 3353.21it/s]
  1%|          | 35/3128 [01:40<1:22:38,  1.60s/it]analyzing contradictions,..
resolving contradictions,..
filtering contradictions,..
An error occurred in MWB_to_REDU_wrapper: No raw data could be associated with metadata. Stopping!
Traceback:
Traceback (most recent call last):
  File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/MWB_to_REDU.py", line 991, in MWB_to_REDU_wrapper
    df_outer_dict = create_dataframe_outer_dict(mwTab_json, rest_response, raw_file_name_df=raw_file_name_df, path_to_csvs=path_to_csvs, allowedTerm_dict=allowedTerm_dict, ontology_table=ontology_table)
  File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/MWB_to_REDU.py", line 681, in create_dataframe_outer_dict
    df_inner_SUBJECT_SAMPLE_FACTORS = create_dataframe_from_SUBJECT_SAMPLE_FACTORS(
  File "/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/MWB_to_REDU.py", line 537, in create_dataframe_from_SUBJECT_SAMPLE_FACTORS
    raise ValueError("No raw data could be associated with metadata. Stopping!")
ValueError: No raw data could be associated with metadata. Stopping!

Processing  ST001845
Initiating REDU-table generation for AN002988
Rest length is 21
raw file key found.
use from match_df: filename_base_wo_extension
use from raw_file_name_df: filename_base_wo_extension
getting substring matches,..

Mapping potential matches:   0%|          | 0/21 [00:00<?, ?it/s][AMapping potential matches: 100%|██████████| 21/21 [00:00<00:00, 4105.74it/s]
  1%|          | 36/3128 [01:41<1:12:23,  1.40s/it]  1%|▏         | 40/3128 [01:41<35:57,  1.43it/s]  /app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  1%|▏         | 42/3128 [01:44<50:52,  1.01it/s]/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  1%|▏         | 43/3128 [01:47<1:04:37,  1.26s/it]/app/workflows/PublicDataset_ReDU_Metadata_Workflow/bin/read_and_validate_redu_from_github.py:30: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  uberon_ontology_table['Label'] = uberon_ontology_table['Label'].astype(str)
  1%|▏         | 44/3128 [01:50<1:20:57,  1.58s/it]